Finish stuff in dev and merge into master so people can test

[raacampbell]

• Document
• Natalia is willing to test everything on a live system once it works.
• Should also bundle with sample data so people can run on their desktop and we can make tests.

[raacampbell]

Docs are better now. Maybe not perfect, so we don't tick yet. But probably it's OK for @nataliaorlova to try now based on the README.