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Skull strip the T1 image
Michelle Voss edited this page Oct 26, 2023
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By the end of this practical you should be able to complete preprocessing on your data with the following steps:
- use FSL's bet tool to remove the brain from a T1 image
- use FSLeyes to check the output of
bet
Access FastX through the remote login:
https://fastx.divms.uiowa.edu:3443/
In the terminal move to the folder where our downloaded data is:
- A the terminal prompt type:
cd fmriLab - Type
lsand you should see the data you downloaded as a folder namedflankerData_n4