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Skull strip the T1 image

Michelle Voss edited this page Oct 26, 2023 · 7 revisions

By the end of this practical you should be able to complete preprocessing on your data with the following steps:

  • use FSL's bet tool to remove the brain from a T1 image
  • use FSLeyes to check the output of bet

Access FastX through the remote login:
https://fastx.divms.uiowa.edu:3443/

In the terminal move to the folder where our downloaded data is:

  • A the terminal prompt type: cd fmriLab
  • Type ls and you should see the data you downloaded as a folder named flankerData_n4

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