Promote internal hsi_check_saturation to package #121
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| # R CMD check across the standard r-lib matrix. | |
| # Adapted from r-lib/actions check-standard for HSItools: | |
| # - Quarto setup added (vignettes are .qmd) | |
| # - triggers on both main and dev (public repo: Actions minutes are free) | |
| # - _R_CHECK_FORCE_SUGGESTS_ disabled (Suggests packages are guarded by | |
| # skip helpers in tests; check must not fail on their absence) | |
| # | |
| # Location in repo: .github/workflows/R-CMD-check.yaml | |
| on: | |
| push: | |
| branches: [main, dev] | |
| pull_request: | |
| branches: [main, dev] | |
| workflow_dispatch: | |
| name: R-CMD-check.yaml | |
| permissions: read-all | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macos-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'oldrel-1'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: quarto-dev/quarto-actions/setup@v2 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck | |
| needs: check | |
| # The Windows runner image ships a preinstalled system R that quarto | |
| # can discover via the Windows Registry instead of the setup-r install. | |
| # QUARTO_R pins quarto to the R actually running the check. NOTE: this | |
| # is correct configuration but NOT sufficient to fix the Windows | |
| # vignette failure (see the check step below). | |
| - name: Point quarto at the setup-r R installation (Windows) | |
| if: runner.os == 'Windows' | |
| shell: pwsh | |
| run: | | |
| $rbin = Split-Path (Get-Command Rscript.exe).Source | |
| echo "QUARTO_R=$rbin" >> $env:GITHUB_ENV | |
| # KNOWN LIMITATION (2026-07-11): quarto's knitr-engine subprocess loses | |
| # the R_LIBS temp package library on Windows runners, so R CMD build | |
| # cannot rebuild .qmd vignettes there ("there is no package called | |
| # 'HSItools'"). Tried and insufficient: same-drive TMPDIR, QUARTO_R. | |
| # Upstream (quarto CLI) issue. Windows therefore checks with vignettes | |
| # skipped; vignette building is still verified on macOS + 3x ubuntu and | |
| # locally on Windows. Revisit on quarto releases. | |
| - uses: r-lib/actions/check-r-package@v2 | |
| env: | |
| _R_CHECK_FORCE_SUGGESTS_: false | |
| # Same-drive temp: guards the known cross-drive Quarto path bug | |
| # (mirrors the local TMPDIR=C:/rtemp fix). No-op on macOS/Linux. | |
| TMPDIR: ${{ runner.temp }} | |
| TMP: ${{ runner.temp }} | |
| TEMP: ${{ runner.temp }} | |
| with: | |
| upload-snapshots: true | |
| build_args: ${{ runner.os == 'Windows' && 'c("--no-manual", "--no-build-vignettes")' || 'c("--no-manual", "--compact-vignettes=gs+qpdf")' }} | |
| args: ${{ runner.os == 'Windows' && 'c("--no-manual", "--as-cran", "--ignore-vignettes")' || 'c("--no-manual", "--as-cran")' }} |