Put reeber parameters that can actually be read in inputs

Author: n8xm

Exec/LyA/inputs

@@ -1,6 +1,9 @@
 # ------------------  INPUTS TO MAIN PROGRAM  -------------------
 max_step = 10000000
 
+# use managed memory
+amrex.the_arena_is_managed=1
+
 nyx.ppm_type         = 1
 nyx.use_colglaz      = 0
 nyx.corner_coupling  = 1
@@ -140,12 +143,11 @@ nyx.plot_z_values   = 7.0 6.0 5.0 4.0 3.0 2.0
 amr.plot_vars        = density xmom ymom zmom rho_e Temp phi_grav
 amr.derive_plot_vars = particle_mass_density particle_count
 
-# Halo Finder
-#nyx.analysis_z_values = 150 10 5 4 3 2
-reeber.halo_int = 1
+# Halo finder
+reeber.min_halo_n_cells = 10
 reeber.negate = 1
-reeber.halo_density_vars = density particle_mass_density
-reeber.halo_extrema_threshold = 20
+#reeber.halo_density_vars = density particle_mass_density
+#reeber.halo_extrema_threshold = 20
 reeber.halo_component_threshold = 10
 #nyx.mass_halo_min = 1.e11
 #nyx.mass_seed = 1.e6