Merge branch 'numpy2' into 'dev'

ftostevin-ont · ftostevin-ont · commit c2f3ff5115aa · 2024-09-03T16:57:00.000Z
pin numpy&lt;2.0

See merge request research/pomoxis!176
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -10,6 +10,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - Read mean Qscore and alignment flag added to `stats_from_bam` output.
 - Add option to `filter_bam` to keep unmapped reads that pass (non-alignment) filters.
 - Enable multithreaded bam file reading and writing in `filter_bam`.
+### Changed
+- Pin numpy<2.0.
 
 ## [v0.3.15] - 2023-12-18
 ### Added
diff --git a/requirements.txt b/requirements.txt
@@ -4,6 +4,6 @@ biopython >=1.63,<1.77  #  1.76 is last version to support python < 3.6
 intervaltree >= 3  # various bugs in 2.x
 matplotlib
 ncls
-numpy
+numpy<2.0
 pandas
 pysam >= 0.15.4
