v0.1.11

• Further shuffling games with racon in mini_assemble for improved accuracy.

v0.1.10

• Add seqkit
• Add racon shuffling

v0.1.9

• Simulation of basecalls using scrappie squiggle simulation and basecalls.
• Scripts to compare common errors in multiple consensuses.
• Include bcftools build.
• Update samtools to 1.8.
• Update racon parameters based on consensus optimisation.

v0.1.8

• Switch to scrappie from pypi
• Update racon and minimap2
• Code for trimming alignment to common overlap
• Some fixing in alignment statistic aggregation

v0.1.7

• Updated racon version
• Refactor alignment services, (adding a python2 client)
• Improved statistic generating scripts
  • sped up basic alignment summaries
  • error cataloging (somewhat similar to nucdiff)

v0.1.5

• Remove use of the original minimap

v0.1.0

• Option to trim adapters in mini_assemble
• Option to error correct reads prior to assembly in mini_assemble
• Reference based consensus option in mini_assemble
• A few convenience options in mini_align
• stats_from_bam script to tabulate alignment statistics