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- an issue can arise if the user is pointing to previously installed humann3 reference databases, or if the locations were manually changed for testing at some point
- this linked commit on the metagenomics branch integrated always explicitly setting the locations based on what is in the config.yaml: 1405949
- changes are in the
humann3_PE
andhumann3_SE
rules - in case it's helpful, i'm also attaching a modified Snakefile that has the changes in it (as a zip due to file-type restrictions)
Snakefile.zip
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