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README.md

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# galaxy-tool-nucleotide-translation
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Translate nucleotide sequences and count stop codons
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## Getting Started
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### Installing
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Installing the tool for use in Galaxy
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(user: **galaxy**)
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```
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cd /home/galaxy/Tools
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git clone https://github.com/naturalis/galaxy-tool-nucleotide-translation
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chmod 777 galaxy-tool-nucleotide-translation/translatenucleotide.py
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```
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Add the following line to /home/galaxy/galaxy/config/tool_conf.xml
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```
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<tool file="/home/galaxy/Tools/galaxy-tool-nucleotide-translation/translatenucleotide.xml" />
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```
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Restart Galaxy to see the tool in the menu
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Translate nucleotide sequences and count stop codons
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## Installation
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### Manual
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Clone this repo in your Galaxy ***Tools*** directory:
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`git clone https://github.com/naturalis/galaxy-tool-nucleotide-translation`
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Make the python script executable:
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`chmod 755 galaxy-tool-nucleotide-translation/translatenucleotide.py`
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Append the file ***tool_conf.xml***:
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`<tool file="/home/galaxy/Tools/galaxy-tool-nucleotide-translation/translatenucleotide.xml" />`
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### Ansible
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Depending on your setup the [ansible.builtin.git](https://docs.ansible.com/ansible/latest/collections/ansible/builtin/git_module.html) module could be used.
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[Install the tool](https://docs.ansible.com/ansible/latest/collections/ansible/builtin/git_module.html#examples) by including the following in your dedicated ***.yml** file:
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` - repo: https://github.com/naturalis/galaxy-tool-nucleotide-translation`
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&ensp;&ensp;`file: translatenucleotide.xml`
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&ensp;&ensp;`version: master`

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