NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method("*",neuronlist)
S3method("+",neuronlist)
S3method("-",neuronlist)
S3method("/",neuronlist)
S3method("[",neuronlist)
S3method("[",neuronlistfh)
S3method("[",neuronlistz)
S3method("[",reglist)
S3method("[<-",neuronlist)
S3method("[[",neuronlistfh)
S3method("[[",neuronlistz)
S3method("[[<-",neuronlistfh)
S3method("boundingbox<-",default)
S3method("data.frame<-",neuronlist)
S3method("materials<-",default)
S3method("materials<-",hxsurf)
S3method("xyzmatrix<-",character)
S3method("xyzmatrix<-",default)
S3method("xyzmatrix<-",dotprops)
S3method("xyzmatrix<-",hxsurf)
S3method("xyzmatrix<-",igraph)
S3method("xyzmatrix<-",list)
S3method("xyzmatrix<-",mesh3d)
S3method("xyzmatrix<-",neuron)
S3method("xyzmatrix<-",neuronlist)
S3method("xyzmatrix<-",shape3d)
S3method("xyzmatrix<-",shapelist3d)
S3method(Ops,dotprops)
S3method(Ops,hxsurf)
S3method(Ops,mesh3d)
S3method(Ops,neuron)
S3method(PotentialSynapses,default)
S3method(PotentialSynapses,dotprops)
S3method(all,equal.dotprops)
S3method(all,equal.im3d)
S3method(all,equal.neuron)
S3method(as.cmtkreg,default)
S3method(as.cmtkreg,matrix)
S3method(as.cmtkreg,reglist)
S3method(as.data.frame,neuronlist)
S3method(as.hxsurf,mesh3d)
S3method(as.im3d,im3d)
S3method(as.im3d,matrix)
S3method(as.list,neuronlistfh)
S3method(as.list,neuronlistz)
S3method(as.mesh3d,ashape3d)
S3method(as.mesh3d,boundingbox)
S3method(as.mesh3d,hxsurf)
S3method(as.neuron,data.frame)
S3method(as.neuron,default)
S3method(as.neuron,igraph)
S3method(as.neuron,morphml_cell)
S3method(as.neuron,neuron)
S3method(as.neuron,ngraph)
S3method(as.neuronlist,default)
S3method(as.neuronlist,neuronlistfh)
S3method(as.neuronlist,neuronlistz)
S3method(as.neuronlistfh,neuronlist)
S3method(as.ngraph,data.frame)
S3method(as.ngraph,igraph)
S3method(as.ngraph,morphml_cell)
S3method(as.ngraph,neuron)
S3method(as.ngraph,ngraph)
S3method(as.seglist,default)
S3method(as.seglist,igraph)
S3method(as.seglist,list)
S3method(as.seglist,neuron)
S3method(as.seglist,seglist)
S3method(boundingbox,character)
S3method(boundingbox,default)
S3method(boundingbox,im3d)
S3method(branchpoints,default)
S3method(branchpoints,igraph)
S3method(branchpoints,neuron)
S3method(c,hxsurf)
S3method(c,neuronlist)
S3method(c,neuronlistfh)
S3method(c,reglist)
S3method(cmtk.targetvolume,character)
S3method(cmtk.targetvolume,default)
S3method(cmtk.targetvolume,im3d)
S3method(cmtk.targetvolume,list)
S3method(contains_points,ashape3d)
S3method(contains_points,boundingbox)
S3method(contains_points,hxsurf)
S3method(contains_points,mesh3d)
S3method(coord2ind,default)
S3method(dim,im3d)
S3method(dimnames,neuronlist)
S3method(dotprops,character)
S3method(dotprops,default)
S3method(dotprops,dotprops)
S3method(dotprops,im3d)
S3method(dotprops,list)
S3method(dotprops,neuron)
S3method(dotprops,neuronlist)
S3method(droplevels,neuronlist)
S3method(endpoints,default)
S3method(endpoints,igraph)
S3method(endpoints,neuron)
S3method(flip,array)
S3method(flip,matrix)
S3method(flip,vector)
S3method(head,neuronlist)
S3method(image,im3d)
S3method(ind2coord,array)
S3method(ind2coord,default)
S3method(ind2coord,im3d)
S3method(intersect,default)
S3method(intersect,neuronlist)
S3method(intersect_plane,default)
S3method(intersect_plane,neuron)
S3method(mask,im3d)
S3method(materials,character)
S3method(materials,default)
S3method(materials,hxsurf)
S3method(mirror,character)
S3method(mirror,default)
S3method(mirror,neuronlist)
S3method(ndigest,default)
S3method(ndigest,dotprops)
S3method(ndigest,neuron)
S3method(ndigest,neuronlistfh)
S3method(nvertices,default)
S3method(nvertices,dotprops)
S3method(nvertices,igraph)
S3method(nvertices,neuron)
S3method(nvertices,neuronlist)
S3method(nvertices,shapelist3d)
S3method(plot,dotprops)
S3method(plot,neuron)
S3method(plot,neuronlist)
S3method(plot3d,boundingbox)
S3method(plot3d,character)
S3method(plot3d,cmtkreg)
S3method(plot3d,dotprops)
S3method(plot3d,hxsurf)
S3method(plot3d,neuron)
S3method(plot3d,neuronlist)
S3method(plot3d,ngraph)
S3method(pointsinside,default)
S3method(potential_synapses,dotprops)
S3method(potential_synapses,neuron)
S3method(potential_synapses,neuronlist)
S3method(print,dotprops)
S3method(print,neuron)
S3method(print,neuronlist)
S3method(print,neuronlistz)
S3method(prune,default)
S3method(prune,dotprops)
S3method(prune,neuron)
S3method(prune,neuronlist)
S3method(prune_in_volume,neuron)
S3method(prune_in_volume,neuronlist)
S3method(prune_online,neuron)
S3method(prune_online,neuronlist)
S3method(prune_twigs,neuron)
S3method(prune_twigs,neuronlist)
S3method(remotesync,default)
S3method(remotesync,neuronlistfh)
S3method(reroot,neuron)
S3method(reroot,neuronlist)
S3method(resample,neuron)
S3method(resample,neuronlist)
S3method(rootpoints,default)
S3method(rootpoints,igraph)
S3method(rootpoints,neuron)
S3method(scale,dotprops)
S3method(scale,neuron)
S3method(setdiff,default)
S3method(setdiff,neuronlist)
S3method(sholl_analysis,neuron)
S3method(sholl_analysis,neuronlist)
S3method(subset,dotprops)
S3method(subset,hxsurf)
S3method(subset,neuron)
S3method(subset,neuronlist)
S3method(summary,dotprops)
S3method(summary,mesh3d)
S3method(summary,neuron)
S3method(summary,neuronlist)
S3method(tail,neuronlist)
S3method(threshold,im3d)
S3method(union,default)
S3method(union,neuronlist)
S3method(voxdims,character)
S3method(voxdims,default)
S3method(voxdims,im3d)
S3method(wire3d,default)
S3method(wire3d,hxsurf)
S3method(wire3d,mesh3d)
S3method(wire3d,plotlyhxsurf)
S3method(wire3d,plotlymesh3d)
S3method(wire3d,plotlyshapelist3d)
S3method(wire3d,shapelist3d)
S3method(with,neuronlist)
S3method(write.vtk,neuron)
S3method(xform,character)
S3method(xform,data.frame)
S3method(xform,default)
S3method(xform,dotprops)
S3method(xform,list)
S3method(xform,mesh3d)
S3method(xform,neuron)
S3method(xform,neuronlist)
S3method(xform,shape3d)
S3method(xformimage,character)
S3method(xformimage,cmtkreg)
S3method(xformimage,default)
S3method(xformimage,reglist)
S3method(xformpoints,character)
S3method(xformpoints,cmtkreg)
S3method(xformpoints,default)
S3method(xformpoints,reglist)
S3method(xformpoints,tpsreg)
S3method(xyzmatrix,character)
S3method(xyzmatrix,default)
S3method(xyzmatrix,dotprops)
S3method(xyzmatrix,hxsurf)
S3method(xyzmatrix,igraph)
S3method(xyzmatrix,list)
S3method(xyzmatrix,mesh3d)
S3method(xyzmatrix,neuron)
S3method(xyzmatrix,neuronlist)
S3method(xyzmatrix,shapelist3d)
export("boundingbox<-")
export("data.frame<-")
export("xyzmatrix<-")
export(affmat2cmtkparams)
export(amiratype)
export(as.cmtkreg)
export(as.dotprops)
export(as.hxsurf)
export(as.im3d)
export(as.neuron)
export(as.neuronlist)
export(as.neuronlistfh)
export(as.ngraph)
export(as.seglist)
export(boundingbox)
export(branchpoints)
export(clampmax)
export(cmtk.bindir)
export(cmtk.call)
export(cmtk.dof2mat)
export(cmtk.extract_affine)
export(cmtk.mat2dof)
export(cmtk.reformatx)
export(cmtk.statistics)
export(cmtk.system2)
export(cmtk.targetvolume)
export(cmtk.version)
export(cmtkparams2affmat)
export(cmtkreg)
export(cmtkreglist)
export(coord2ind)
export(correct_root)
export(distal_to)
export(dotprops)
export(endpoints)
export(fileformats)
export(find.neuron)
export(find.soma)
export(flip)
export(get_distance_to_soma)
export(get_topo_features)
export(getformatreader)
export(getformatwriter)
export(graph.nodes)
export(ijkpos)
export(im3d)
export(imexpand.grid)
export(imscalebar)
export(imslice)
export(ind2coord)
export(intersect)
export(intersect_plane)
export(invert_reglist)
export(is.amiramesh)
export(is.cmtkreg)
export(is.dotprops)
export(is.fijitraces)
export(is.im3d)
export(is.neuron)
export(is.neuronlist)
export(is.nrrd)
export(is.swc)
export(is.vaa3draw)
export(make_model)
export(makeboundingbox)
export(mask)
export(materials)
export(mirror)
export(nclear3d)
export(ndigest)
export(neuron)
export(neuronlist)
export(neuronlistfh)
export(neuronlistz)
export(ngraph)
export(nlapply)
export(nlscan)
export(nmapply)
export(nopen3d)
export(normalise_swc)
export(npop3d)
export(nrrd.datafiles)
export(nrrd.voxdims)
export(nvertices)
export(nview3d)
export(origin)
export(overlap_score)
export(pan3d)
export(plane_coefficients)
export(pointsinside)
export(potential_synapses)
export(progress_natprogress)
export(projection)
export(prune)
export(prune_edges)
export(prune_in_volume)
export(prune_online)
export(prune_strahler)
export(prune_twigs)
export(prune_vertices)
export(read.amiramesh)
export(read.amiramesh.header)
export(read.cmtk)
export(read.cmtkreg)
export(read.hxsurf)
export(read.im3d)
export(read.landmarks)
export(read.morphml)
export(read.neuron)
export(read.neuron.fiji)
export(read.neuron.neuroml)
export(read.neuron.swc)
export(read.neuronlistfh)
export(read.neurons)
export(read.ngraph.swc)
export(read.nrrd)
export(read.nrrd.header)
export(read.vaa3draw)
export(registerformat)
export(reglist)
export(remotesync)
export(reroot)
export(resample)
export(rootpoints)
export(seglengths)
export(seglist)
export(seglist2swc)
export(segmentgraph)
export(select_points)
export(setdiff)
export(sholl_analysis)
export(simplify_neuron)
export(simplify_reglist)
export(smooth_neuron)
export(spine)
export(stitch_neuron)
export(stitch_neurons)
export(stitch_neurons_mst)
export(strahler_order)
export(sub2ind)
export(threshold)
export(tpsreg)
export(union)
export(unmask)
export(voxdims)
export(wire3d)
export(write.amiramesh)
export(write.cmtk)
export(write.cmtkreg)
export(write.hxsurf)
export(write.im3d)
export(write.landmarks)
export(write.neuron)
export(write.neuronlistfh)
export(write.neurons)
export(write.nrrd)
export(write.nrrd.header)
export(write.nrrd.header.for.file)
export(write.vtk)
export(xform)
export(xformimage)
export(xformpoints)
export(xyzmatrix)
export(xyzmatrix2list)
export(xyzmatrix2str)
export(xyzpos)
import(grDevices)
import(graphics)
import(rgl)
import(utils)
importClassesFrom(filehash,filehash)
importClassesFrom(filehash,filehashRDS)
importFrom(digest,digest)
importFrom(igraph,"V<-")
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,add_edges)
importFrom(igraph,as.directed)
importFrom(igraph,as.undirected)
importFrom(igraph,as_edgelist)
importFrom(igraph,bfs)
importFrom(igraph,decompose)
importFrom(igraph,degree)
importFrom(igraph,delete.vertices)
importFrom(igraph,dfs)
importFrom(igraph,diameter)
importFrom(igraph,distances)
importFrom(igraph,get.diameter)
importFrom(igraph,is_connected)
importFrom(igraph,is_directed)
importFrom(igraph,make_empty_graph)
importFrom(igraph,neighborhood)
importFrom(igraph,set_edge_attr)
importFrom(igraph,shortest_paths)
importFrom(igraph,vcount)
importFrom(igraph,vertex_attr)
importFrom(methods,is)
importFrom(nabor,knn)
importFrom(nat.utils,RunCmdForNewerInput)
importFrom(nat.utils,is.gzip)
importFrom(nat.utils,makelock)
importFrom(nat.utils,removelock)
importFrom(rgl,arrow3d)
importFrom(rgl,par3d)
importFrom(rgl,plot3d)
importFrom(rgl,points3d)
importFrom(rgl,pop3d)
importFrom(rgl,rotationMatrix)
importFrom(rgl,scaleMatrix)
importFrom(rgl,spheres3d)
importFrom(rgl,text3d)
importFrom(stats,approx)
importFrom(stats,dnorm)
importFrom(stats,na.omit)
importFrom(stats,reshape)
importFrom(stats,smooth.spline)
importFrom(tools,file_path_sans_ext)
importFrom(tools,md5sum)
importFrom(yaml,as.yaml)
importFrom(yaml,yaml.load_file)
importMethodsFrom(filehash,"[[")