5959 snakefile : " workflow/Snakefile"
6060 args : " --cores 1 --use-conda --conda-cleanup-pkgs cache resources/reference/genome.fasta"
6161 stagein : |
62- conda install snakemake-storage-plugin-zenodo snakemake-storage-plugin-http
62+ conda install snakemake-storage-plugin-zenodo
63+ conda install snakemake-storage-plugin-http
6364
6465 - name : Download truthsets
6566 uses : snakemake/snakemake-github-action@v2
6869 snakefile : " workflow/Snakefile"
6970 args : " --use-conda --cores 1 --conda-cleanup-pkgs cache --until benchmark_get_truth"
7071 stagein : |
71- conda install snakemake-storage-plugin-zenodo snakemake-storage-plugin-http
72+ conda install snakemake-storage-plugin-zenodo
73+ conda install snakemake-storage-plugin-http
7274
7375 # This step is necessary (after downloading the truthsets above) to ensure
7476 # that the files coming from the git repo are not triggering reruns
8183 snakefile : " workflow/Snakefile"
8284 args : " --cores 1 --touch resources/regions/*/test-regions.cov-*.bed"
8385 stagein : |
84- conda install snakemake-storage-plugin-zenodo snakemake-storage-plugin-http
86+ conda install snakemake-storage-plugin-zenodo
87+ conda install snakemake-storage-plugin-http
8588
8689 - name : Run analysis
8790 uses : snakemake/snakemake-github-action@v2
9194 args : >
9295 --cores 2 --use-conda --conda-cleanup-pkgs cache
9396 stagein : |
94- conda install snakemake-storage-plugin-zenodo snakemake-storage-plugin-http
97+ conda install snakemake-storage-plugin-zenodo
98+ conda install snakemake-storage-plugin-http
9599
96100 - name : Create report
97101 uses : snakemake/snakemake-github-action@v2
@@ -100,7 +104,8 @@ jobs:
100104 snakefile : " workflow/Snakefile"
101105 args : " --report report.zip"
102106 stagein : |
103- conda install snakemake-storage-plugin-zenodo snakemake-storage-plugin-http
107+ conda install snakemake-storage-plugin-zenodo
108+ conda install snakemake-storage-plugin-http
104109
105110 - name : Upload report as artifact
106111
0 commit comments