File tree Expand file tree Collapse file tree 2 files changed +2
-22
lines changed
Expand file tree Collapse file tree 2 files changed +2
-22
lines changed Original file line number Diff line number Diff line change 3939 # this might remove tools that are actually needed,
4040 # if set to "true" but frees about 6 GB
4141 tool-cache : false
42-
42+
4343 # all of these default to true, but feel free to set to
4444 # "false" if necessary for your workflow
4545 android : true
4949 swap-storage : true
5050 docker-images : false
5151
52- # - name: Increase swapfile
53- # run: |
54- # sudo swapoff -a
55- # sudo fallocate -l 30G /swapfile
56- # sudo chmod 600 /swapfile
57- # sudo mkswap /swapfile
58- # sudo swapon /swapfile
59- # sudo swapon --show
60-
6152 - name : Check out repository code
6253 uses : actions/checkout@v2
6354
9586 pip install snakemake-storage-plugin-zenodo
9687 pip install snakemake-storage-plugin-http
9788
98- # - name: Analysis dryrun
99- # uses: snakemake/snakemake-github-action@v2
100- # with:
101- # directory: "."
102- # snakefile: "workflow/Snakefile"
103- # args: >
104- # --sdm conda --conda-cleanup-pkgs cache --dryrun --rerun-triggers mtime
105- # stagein: |
106- # pip install snakemake-storage-plugin-zenodo
107- # pip install snakemake-storage-plugin-http
108-
10989 - name : Run analysis
11090 uses : snakemake/snakemake-github-action@v2
11191 with :
Original file line number Diff line number Diff line change @@ -218,7 +218,7 @@ variant-calls:
218218 # subcategory: CHM-eval
219219 # zenodo:
220220 # deposition: 7352532
221- # filename: ERR1341796_bwa.freebayes.vcf.gz
221+ # filename: ERR1341796_bwa.freebayes.vcf.gz
222222 # benchmark: chm-eval
223223 # rename-contigs: true
224224 GHGA-sarek-bwa-haplotypecaller-CHM-ERR1341796 :
You can’t perform that action at this time.
0 commit comments