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fix: remove commented out code
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2 files changed

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.github/workflows/main.yml

Lines changed: 1 addition & 21 deletions
Original file line numberDiff line numberDiff line change
@@ -39,7 +39,7 @@ jobs:
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# this might remove tools that are actually needed,
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# if set to "true" but frees about 6 GB
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tool-cache: false
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# all of these default to true, but feel free to set to
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# "false" if necessary for your workflow
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android: true
@@ -49,15 +49,6 @@ jobs:
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swap-storage: true
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docker-images: false
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# - name: Increase swapfile
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# run: |
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# sudo swapoff -a
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# sudo fallocate -l 30G /swapfile
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# sudo chmod 600 /swapfile
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# sudo mkswap /swapfile
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# sudo swapon /swapfile
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# sudo swapon --show
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- name: Check out repository code
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uses: actions/checkout@v2
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@@ -95,17 +86,6 @@ jobs:
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pip install snakemake-storage-plugin-zenodo
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pip install snakemake-storage-plugin-http
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# - name: Analysis dryrun
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# uses: snakemake/snakemake-github-action@v2
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# with:
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# directory: "."
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# snakefile: "workflow/Snakefile"
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# args: >
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# --sdm conda --conda-cleanup-pkgs cache --dryrun --rerun-triggers mtime
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# stagein: |
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# pip install snakemake-storage-plugin-zenodo
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# pip install snakemake-storage-plugin-http
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- name: Run analysis
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uses: snakemake/snakemake-github-action@v2
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with:

config/config.yaml

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -218,7 +218,7 @@ variant-calls:
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# subcategory: CHM-eval
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# zenodo:
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# deposition: 7352532
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# filename: ERR1341796_bwa.freebayes.vcf.gz
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# filename: ERR1341796_bwa.freebayes.vcf.gz
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# benchmark: chm-eval
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# rename-contigs: true
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GHGA-sarek-bwa-haplotypecaller-CHM-ERR1341796:

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