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test: upgrade to snakemake github action v2
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.github/workflows/main.yml

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@@ -53,7 +53,7 @@ jobs:
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uses: actions/checkout@v2
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- name: Download reference genome
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uses: snakemake/snakemake-github-action@v1
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uses: snakemake/snakemake-github-action@v2
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with:
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directory: "."
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snakefile: "workflow/Snakefile"
@@ -62,7 +62,7 @@ jobs:
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pip install snakemake-storage-plugin-zenodo snakemake-storage-plugin-http
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- name: Download truthsets
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uses: snakemake/snakemake-github-action@v1
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uses: snakemake/snakemake-github-action@v2
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with:
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directory: "."
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snakefile: "workflow/Snakefile"
@@ -75,7 +75,7 @@ jobs:
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# because their modification dates are too new or too old.
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# (as git does not preserve modification dates)
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- name: Fix modification dates
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uses: snakemake/snakemake-github-action@v1
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uses: snakemake/snakemake-github-action@v2
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with:
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directory: "."
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snakefile: "workflow/Snakefile"
@@ -84,7 +84,7 @@ jobs:
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pip install snakemake-storage-plugin-zenodo snakemake-storage-plugin-http
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- name: Run analysis
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uses: snakemake/snakemake-github-action@v1
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uses: snakemake/snakemake-github-action@v2
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with:
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directory: "."
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snakefile: "workflow/Snakefile"
@@ -94,7 +94,7 @@ jobs:
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pip install snakemake-storage-plugin-zenodo snakemake-storage-plugin-http
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- name: Create report
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uses: snakemake/snakemake-github-action@v1
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uses: snakemake/snakemake-github-action@v2
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with:
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directory: "."
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snakefile: "workflow/Snakefile"

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