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This repository was archived by the owner on Sep 4, 2025. It is now read-only.
Copy file name to clipboardExpand all lines: HTAN.model.csv
+1-1Lines changed: 1 addition & 1 deletion
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@@ -177,7 +177,7 @@ Ligation Condition,Name of ligase and condition for proximity ligation,,,,TRUE,S
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Biotin Enrichment,Whether biotin is used for enriching ligation product,"Yes, No",,,TRUE,Sequencing,,,
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DNA Input Amount,"Amount of DNA for library construction, in nanograms.",,,,TRUE,Sequencing,,,int
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Resolution,"Binning size used for generating contact matrix, in basepair.",,,,TRUE,Sequencing,,,
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Stripe Calling,"Tool used for identifying architectural stripe-forming, interaction hotspots.","MACS2, Other",,,TRUE,Sequencing,,,list::-?\d+
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Stripe Calling,"Tool used for identifying architectural stripe-forming, interaction hotspots.","MACS2, Other",,,TRUE,Sequencing,,,
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Loop Window,Binning size used for calling significant dot interactions (loops),,,,TRUE,Sequencing,,,list like :: regex search -?\d+
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Stripe Window,Binning size used for calling significant architectural stripes. Can be an integer or comma-separated list of integers indicating bin size and sliding window size if different.,,,,TRUE,Sequencing,,,list like :: regex search -?\d+
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Loop Calling,Tool used for identifying loop interactions,"HiCCUPS, Cooltools, Other",,,TRUE,Sequencing,,,
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