05_pubs-spatial.md

Search for HTAN publications about spatial transcriptomics from 2024

---

Here are 7 HTAN publications about spatial transcriptomics from 2024:

1. DBiTplus (Enninful et al.) — Integrative method for spatial transcriptome + proteome mapping on the same tissue section. (Research Square & bioRxiv)

   • DOI: 10.1101/2024.11.07.622523

2. Breast cancer subtypes and lineages (Iglesia et al.) — Multi-omic (bulk, single-cell, spatial) analysis of chromatin accessibility and transcriptional dynamics across breast cancer subtypes. Nature Cancer

   • DOI: 10.1038/s43018-024-00773-6

3. Tumour evolution in 2D and 3D space (Mo et al.) — 131 tumour sections across 6 cancer types profiled by Visium ST, snRNA-seq, and CODEX. Nature

   • DOI: 10.1038/s41586-024-08087-4

4. Fallopian tube precursors to HGSOC (Kader et al.) — Integrated high-plex imaging and spatial transcriptomics of ovarian cancer precursors. bioRxiv

   • DOI: 10.1101/2024.09.25.615007

5. Imputing protein abundance in multiplex imaging (Kirchgaessner et al.) — Methods for addressing limited marker panels in spatial proteomics/transcriptomics. bioRxiv

   • DOI: 10.1101/2023.12.05.570058

6. Bone marrow niche biogeography (Bandyopadhyay et al.) — scRNA-seq + proteomic imaging to map non-hematopoietic cell spatial organization in human bone marrow. Cell

   • DOI: 10.1016/j.cell.2024.04.013

The standout papers are the Nature paper by Mo et al. (large multi-cancer Visium cohort) and the Cell paper on bone marrow niches. Would you like me to fetch the full details on any of these?