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cff-version: "1.2.0"
authors:
- family-names: Allen
given-names: Joshua M.
orcid: "https://orcid.org/0009-0008-0002-5239"
- email: krg3@uic.edu
family-names: Gandhi
given-names: Keshav R.
orcid: "https://orcid.org/0009-0000-1718-1862"
- family-names: Alhazmy
given-names: Raghid
orcid: "https://orcid.org/0009-0005-6614-7050"
- family-names: Wasnik
given-names: Yash
orcid: "https://orcid.org/0009-0006-0108-7445"
- email: cfliege2@illinois.edu
family-names: Fliege
given-names: Christina E.
orcid: "https://orcid.org/0000-0001-8085-779X"
contact:
- email: krg3@uic.edu
family-names: Gandhi
given-names: Keshav R.
orcid: "https://orcid.org/0009-0000-1718-1862"
- email: cfliege2@illinois.edu
family-names: Fliege
given-names: Christina E.
orcid: "https://orcid.org/0000-0001-8085-779X"
doi: 10.5281/zenodo.19662441
message: If you use this software, please cite both the original publication of NEAT in PLOS One (2016) as well as our
article from the Journal of Open Source Software (2026). You can find both citations at the top of README.md, with
DOIs provided that link to the original papers.
preferred-citation:
authors:
- family-names: Allen
given-names: Joshua M.
orcid: "https://orcid.org/0009-0008-0002-5239"
- email: krg3@uic.edu
family-names: Gandhi
given-names: Keshav R.
orcid: "https://orcid.org/0009-0000-1718-1862"
- family-names: Alhazmy
given-names: Raghid
orcid: "https://orcid.org/0009-0005-6614-7050"
- family-names: Wasnik
given-names: Yash
orcid: "https://orcid.org/0009-0006-0108-7445"
- email: cfliege2@illinois.edu
family-names: Fliege
given-names: Christina E.
orcid: "https://orcid.org/0000-0001-8085-779X"
date-published: 2026-05-04
doi: 10.21105/joss.09056
issn: 2475-9066
issue: 121
journal: Journal of Open Source Software
publisher:
name: Open Journals
start: 9056
title: "Enhancing short-read sequencing simulation: Updates to NEAT"
type: article
url: "https://joss.theoj.org/papers/10.21105/joss.09056"
volume: 11
title: "Enhancing short-read sequencing simulation: Updates to NEAT"