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assignments/grass_hpc_futures.html

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@@ -129,7 +129,7 @@ <h3>Computing development pressure</h3>
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#!/bin/bash
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#BSUB -n 16
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#BSUB -W 3:00
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#BSUB -R span[hosts=1]
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#BSUB -R "span[hosts=1]"
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#BSUB -R "rusage[mem=2GB]"
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#BSUB -oo devpressure_out
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#BSUB -eo devpressure_err
@@ -223,17 +223,17 @@ <h3>Postprocessing</h3>
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grass /share/gis714s26/$USER/futures/results_${SEED} --exec r.colors map=out_seed_${SEED} raster=out_state_1_seed_${SEED}@pga_1_${SEED}
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</code></pre>
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Then create another script that submits the patching jobs for each seed (<code>submit_patch.sh</code>):
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Then submit the computations as 10 separate jobs with the following command:
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<pre><code>
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N=4
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for SEED in {1..10}
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do
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bsub -n ${N} -W 1:00 -R span[hosts=1] -J patch_${SEED} -oo patch_${SEED}_out -eo patch_${SEED}_err bash /home/$USER/patch.sh ${SEED} ${N}
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bsub -n 4 -W 1:00 -R "span[hosts=1]" -R "rusage[mem=1GB]" -J patch_${SEED} -oo patch_${SEED}_out -eo patch_${SEED}_err bash /home/$USER/patch.sh ${SEED} 4
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done
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</code></pre>
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Run the script with <code>bash submit_patch.sh</code>. This will submit 10 jobs.
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The results are rasters <code>out_seed_1@results_1</code>, <code>out_seed_2@results_2</code>, etc.
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<span class="question">
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Report the run times for all your computations and include a figure with the results.
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</span>

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