towards v0.3

[kushalkolar]

high priority

• new tests #89
• lockfile to protect batch dataframe #135
• Check that all UUIDs match with caiman.save_to_disk() #136
• add caiman.backup_dataframe(), change index parsing #119
• Move to hdf5 file dataframe batch files instead of pickle. Maintain backwards compatibility. Test extensively.

new features

• return_copy should probably be dropped from kwargs when checking cache hits #80
• add get_chunked_dfof() cnmf extension function #86
• reuse memmaps across batch items #129
• dataframe extensions to copy and rsync all batch data. #121
• Allow Ain matrix, binary or sparse, masks to seed components
• decide on best approach for get_input_movie(), see get_input_movie() should return tifffile.TiffFile instance or pims stuff depending on a kwarg #52
• add OnACID algo #152

mcorr

• Add get_template(), list of templates for each chunk

cnmf

• register_items() - DataFrame extension for CNMF outputs, multisession registration