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* update test suite (#140) * update test suite * update test suite * update test suite * update test suite * update test suite * update test suite * update test suite * update test suite * update test suite * update test suite * update tests * update actions * update actions * update actions * update actions * update actions * update actions * update actions * update actions * update actions * update actions * update actions * update actions * update actions * update actions * update actions * update actions * update actions * update actions * update ci without spider * update ci without spider * update ci without spider * update ci without spider * update ci without spider * update ci without spider * update ci without spider * update ci without spider * update ci without spider * update workflow * update workflow * update workflow * update workflow * update workflow * update workflow * update workflow * update workflow * update workflow * update workflow * update workflow * update workflow * update workflow * update workflow * update workflow * update actions * update github * update github * update github * update github * update github * update github * update github * fix spider test * update test data with annotation in lioness * changed test data lioness * update test data * update test data * separte process functions * separte process functions * separte process functions * separte process functions * separte process functions * separte process functions * separte process functions * separte process functions * separte process functions * separte process functions * separte process functions * removed macos from tests * fix savepairs (#142) * fix savepairs * fix savepairs * add eye in PPI (#145) * add eye in PPI * update tfcoop * add python gt data * add labels to panda test * expand test data * rename optpanda to boa (#144) * fix typo (#148) * fix typo * update aactions * update aactions * update aactions * update aactions * fix motif saving pairs * fix motif saving pairs * fix motif saving pairs * fix motif saving pairs * Update README.md
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.github/workflows/main.yml

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runs-on: ${{ matrix.os }}
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strategy:
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matrix:
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os: [ubuntu-latest]
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os: [ubuntu-20.04]
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steps:
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token: ${{ secrets.GITHUB_TOKEN }}
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- name: Set up MATLAB
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uses: matlab-actions/setup-matlab@v1
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with:
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release: R2020a
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- name: install bedtools ubuntu
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if: matrix.os == 'ubuntu-latest'
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if: matrix.os == 'ubuntu-20.04'
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run: |
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wget https://github.com/arq5x/bedtools2/releases/download/v2.29.0/bedtools-2.29.0.tar.gz
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tar -zxvf bedtools-2.29.0.tar.gz

README.md

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[![Documentation Status](https://readthedocs.org/projects/netzoom/badge/?version=latest)](https://netzoom.readthedocs.io/en/latest/?badge=latest)
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[![tutorials](https://img.shields.io/badge/netZooM-tutorials-9cf)](https://github.com/netZoo/netZooM/tree/master/tutorials)
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netZooM is tested on: (OS: Ubuntu) X (Language: MATLAB)
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netZooM is tested on: (OS: Ubuntu 20.04) X (Language: MATLAB R2020a)
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## Description
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netZooM is a MATLAB package of network methods.
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## Zoo animals
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(gpu)PANDA, (gpu)LIONESS, (gpu)PUMA, (gpu)SPIDER, optPANDA, and OTTER.
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(gpu)PANDA, (gpu)LIONESS, (gpu)PUMA, (gpu)SPIDER, BOA, and OTTER.
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## Quick guide
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Clone the repository into your local disk:
File renamed without changes.

netZooM/tools/PANDA.m

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% Outputs:
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% RegNet : inferred gene-TF regulatory network
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% Author(s):
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% Kimberley Glass
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% Kimberly Glass
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% Publications:
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% https://doi.org/10.1371/journal.pone.0064832
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