ERROR: dependency ‘cmdstanr’ is not available for package ‘netZooR’

[jeroen]

@taraeicher in bioc/netZooR@baa7bd3 you removed a Remotes: field that provides cmdstanr. However you did not remove the dependency from the DESCRIPTION file: https://github.com/bioc/netZooR/blob/devel/DESCRIPTION#L43-L44

Therefore the build fails, see: https://github.com/r-universe/bioc/actions/runs/15153495236/job/42755643232

So you either need to remove cmdstanr from the DESCRIPTION all together, or a line like this to your DESCRIPTION:

Additional_repositories: https://stan-dev.r-universe.dev

[taraeicher]

Thank you for bringing this to my attention, and in fact this has been done in the latest commit. There are current outstanding issues with the cmdstanr dependency in Bioconductor which we are working to resolve.

[marouenbg]

@taraeicher I think you need to try @jeroen suggestion by adding an additional repositorys line in DESCRIPTION.

[taraeicher]

@marouenbg I removed the line and was able to resolve this error, but I'm seeing another error unrelated to cmdstanr and not yet getting a clean build. Once I am able to get a clean build, I will add cmdstanr back and add the additional line as suggested.

[taraeicher]

@jeroen I've also tried adding the line you suggested to the DESCRIPTION, but I'm still seeing the same error in the Bioconductor build. We unfortunately need cmdstanr in order to run one of our functions, so we cannot completely remove it from the DESCRIPTION.