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netbooks/Welcome_to_netBooks.ipynb

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"source": [
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"<center><h1> Welcome to netBooks! </h1></center>\n",
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"<center><h3>netBooks is a cloud notebook server for the Network Zoo. </h3></center>\n",
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"<center><a href=\"https://github.com/netZoo/netbooks/releases/tag/1.8.1\">v 1.8.1</a> - last update: 12/20/2021</center>\n",
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"<center><a href=\"https://github.com/netZoo/netbooks/releases/tag/1.9.0\">v 1.9</a> - last update: 12/20/2021</center>\n",
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"\n",
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"### What is netZoo?\n",
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"The Network Zoo (netZoo, http://netzoo.github.io) is a community-driven catalog of gene regulatory network inference and analysis methods. The methods span gene regulatory network estimation and reconstruction, module identification, state transition inference, and mutation network completion. The package was deemed a 'zoo' because the methods were called after [animal names](https://netzoo.github.io/zooanimals/) such as [OTTER](https://netzoo.github.io/zooanimals/otter/) and [SAMBAR](https://netzoo.github.io/zooanimals/sambar/).\n",
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" \n",
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" - [Differential gene targeting of pancreatic cancer subtypes](netZooR/lioness_tcga_targeting_netbook.ipynb). Publication: [DOI: 10.3389/fgene.2021.649942](https://internal-journal.frontiersin.org/articles/10.3389/fgene.2021.649942/full)\n",
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" - [Building and analyzing enhancer-driven TF-gene regulatory networks PANDA and LIONESS](netZooR/maize_genome.ipynb). Publication: [DOI: 10.3389/fgene.2020.606285](https://www.frontiersin.org/articles/10.3389/fgene.2020.606285/full)\n",
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" \n",
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"- [netZooPy](netZooPy) on Python 3.8.3\n",
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