[FIX] Fix deprecations

Author: liuzhenqi77

neuromaps/datasets/_osf.py

@@ -4,7 +4,12 @@
 """
 
 import os
-from pkg_resources import resource_filename
+try:
+    import importlib.resources
+    _importlib_avail = True
+except ImportError:
+    from pkg_resources import resource_filename
+    _importlib_avail = False
 import json
 
 from nilearn.datasets.utils import _md5_sum_file
@@ -25,9 +30,12 @@
 INFO_KEYS = ['source', 'refs', 'comments', 'demographics']
 
 # distribution JSON
-OSFJSON = resource_filename(
-    'neuromaps', os.path.join('datasets', 'data', 'osf.json')
-)
+if _importlib_avail:
+    OSFJSON = importlib.resources.files("neuromaps") / "datasets/data/osf.json"
+else:
+    OSFJSON = resource_filename(
+        'neuromaps', os.path.join('datasets', 'data', 'osf.json')
+    )
 
 
 def parse_filename(fname, return_ext=True, verbose=False):

neuromaps/datasets/tests/test__osf.py

@@ -3,7 +3,12 @@
 For testing neuromaps.datasets._osf functionality
 """
 
-from pkg_resources import resource_filename
+try:
+    import importlib.resources
+    _importlib_avail = True
+except ImportError:
+    from pkg_resources import resource_filename
+    _importlib_avail = False
 
 import pytest
 
@@ -21,7 +26,10 @@ def test_parse_fname_list():
 
 
 def test_parse_json():
-    osf = resource_filename('neuromaps', 'datasets/data/osf.json')
+    if _importlib_avail:
+        osf = importlib.resources.files("neuromaps") / "datasets/data/osf.json"
+    else:
+        osf = resource_filename('neuromaps', 'datasets/data/osf.json')
     out = _osf.parse_json(osf)
     assert isinstance(out, list) and all(isinstance(i, dict) for i in out)
 

neuromaps/datasets/utils.py

@@ -5,7 +5,12 @@
 
 import json
 import os
-from pkg_resources import resource_filename
+try:
+    import importlib.resources
+    _importlib_avail = True
+except ImportError:
+    from pkg_resources import resource_filename
+    _importlib_avail = False
 
 import requests
 
@@ -74,8 +79,16 @@ def get_dataset_info(name, return_restricted=True):
         Information on requested data
     """
 
-    fn = resource_filename('neuromaps',
-                           os.path.join('datasets', 'data', 'osf.json'))
+    if _importlib_avail:
+        fn = importlib.resources.files("neuromaps") / "datasets/data/osf.json"
+    else:
+        fn = resource_filename(
+            'neuromaps',
+            s.path.join('datasets', 'data', 'osf.json')
+        )
+
+
+    
     with open(fn) as src:
         osf_resources = _osfify_urls(json.load(src), return_restricted)
 

neuromaps/nulls/tests/test_nulls.py

@@ -119,6 +119,7 @@ def test_fixture_surface_parcellated_smoke(sample_surface_parcellated):
     # print(surf_tuple, parc_name, annot_parc.shape[0])
     pass
 
+@pytest.mark.filterwarnings("ignore::DeprecationWarning") # nilearn/nilearn/pull/3722
 def test_fixture_volume_parcellated_smoke(sample_volume_parcellated):
     vol_tuple, parc_name, annot_parc = sample_volume_parcellated
     # print(vol_tuple, parc_name, annot_parc.shape[0])

neuromaps/parcellate.py

@@ -4,7 +4,10 @@
 """
 
 import nibabel as nib
-from nilearn.input_data import NiftiLabelsMasker
+try:
+    from nilearn.maskers import NiftiLabelsMasker
+except:
+    from nilearn.input_data import NiftiLabelsMasker
 from nilearn.image import new_img_like
 from nilearn.masking import compute_background_mask
 import numpy as np