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MIMIC-III Report Summarization

Paper

Title: MIMIC-III, a freely accessible critical care database

Abstract: https://www.nature.com/articles/sdata201635

MIMIC-III containins de-identified health data from around 40,000 patients admitted to intensive care units at a large tertiary care hospital. This task focuses on radiology report summarization.

Tasks

  • mimic_repsum: Generate extractive notes summaries, evaluated with Radgraph-F1, bleu, rouge, bert_score, bleurt.
  • mimic_repsum_perplexity: Generate extractive notes summaries, evaluated with perplexity.

Citation

@article{johnson2016mimic,
  title={MIMIC-III, a freely accessible critical care database},
  author={Johnson, Alistair EW and Pollard, Tom J and Shen, Lu and Lehman, Li-wei H and Feng, Mengling and Ghassemi, Mohammad and Moody, Benjamin and Szolovits, Peter and Anthony Celi, Leo and Mark, Roger G},
  journal={Scientific data},
  volume={3},
  number={1},
  pages={1--9},
  year={2016},
  publisher={Nature Publishing Group}
}