- CLI: unmentioned columns now go to
ignore_columnsinstead ofoutcome_columns- Previously, when
--outcome_columnswas not explicitly set, all columns that were not the id, weight, or a covariate were automatically classified as outcome columns. Now those columns are placed intoignore_columnsinstead. - Columns that are explicitly mentioned — the id column, weight column, covariate columns, and outcome columns — are not ignored.
- Previously, when
- Improved
keep_columnsdocumentation- Updated docstrings for
has_keep_columns(),keep_columns(), and the--keep_columnsargument to clarify that keep columns control which columns appear in the final output CSV. Keep columns that are not id, weight, covariate, or outcome columns will be placed intoignore_columnsduring processing but are still retained and available in the output.
- Updated docstrings for
- Weight diagnostics now consistently accept DataFrame inputs
design_effect,nonparametric_skew,prop_above_and_below, andweighted_median_breakdown_pointnow explicitly normalize DataFrame inputs to their first column before computation, matching validation behavior and returning scalar/Series outputs consistently.
- Expanded warning coverage for
Sample.from_frame()ID inference- Added assertions that validate all three expected warnings are emitted when inferring an
idcolumn and default weights, including ID guessing, ID string casting, and automatic weight creation.
- Added assertions that validate all three expected warnings are emitted when inferring an
- Added focused unit coverage for IPW helpers
- Added tests for
link_transform(), andcalc_dev()to validate behavior for extreme probabilities, and finite 10-fold deviance summaries.
- Added tests for
- Outcome weight impact diagnostics
- Added paired outcome-weight impact tests (
y*w0vsy*w1) with confidence intervals. - Exposed in
BalanceDFOutcomes,Sample.diagnostics(), and the CLI via--weights_impact_on_outcome_method.
- Added paired outcome-weight impact tests (
- Pandas 3 support
- Updated compatibility and tests for pandas 3.x
- Categorical distribution metrics without one-hot encoding
- KLD/EMD/CVMD/KS on
BalanceDF.covars()now operate on raw categorical variables (with NA indicators) instead of one-hot encoded columns.
- KLD/EMD/CVMD/KS on
- Misc
- Raw-covariate adjustment for custom models
Sample.adjust()now supports fitting models on raw covariates (without a model matrix) for IPW viause_model_matrix=False. String, object, and boolean columns are converted to pandasCategoricaldtype, allowing sklearn estimators with native categorical support (e.g.,HistGradientBoostingClassifierwithcategorical_features="from_dtype") to handle them correctly. Requires scikit-learn >= 1.4 when categorical columns are present.
- Validate weights include positive values
- Added a guard in weight diagnostics to error when all weights are zero.
- Support configurable ID column candidates
Sample.from_frame()andguess_id_column()now accept candidate ID column names when auto-detecting the ID column.
- Formula support for BalanceDF model matrices
BalanceDF.model_matrix()now accepts aformulaargument to build custom model matrices without precomputing them manually.
- Raw-covariate adjustment for custom models
- Removed deprecated setup build
- Replaced deprecated
setup.pywithpyproject.tomlbuild in CI to avoid build failure.
- Replaced deprecated
- Hardened ID column candidate validation
guess_id_column()now ignores duplicate candidate names and validates that candidates are non-empty strings.
- Hardened pandas 3 compatibility paths
- Updated string/NA handling and discrete checks for pandas 3 dtypes, and refreshed tests to accept string-backed dtypes.
- Pandas 3.x compatibility
- Expanded the pandas dependency range to allow pandas 3.x releases.
- Direct util imports in tests
- Refactored util test modules to import helpers directly from their modules instead of via
balance_util.
- Refactored util test modules to import helpers directly from their modules instead of via
- Require positive weights for weight diagnostics that normalize or aggregate
design_effect,nonparametric_skew,prop_above_and_below, andweighted_median_breakdown_pointnow raise aValueErrorwhen all weights are zero.- Migration: ensure your weights include at least one positive value
before calling these diagnostics, or catch the
ValueErrorif all-zero weights are possible in your workflow.
- Added EMD/CVMD/KS distribution diagnostics
BalanceDFnow exposes Earth Mover's Distance (EMD), Cramér-von Mises distance (CVMD), and Kolmogorov-Smirnov (KS) statistics for comparing adjusted samples to targets.- These diagnostics support weighted or unweighted comparisons, apply discrete/continuous formulations, and respect
aggregate_by_main_covarfor one-hot categorical aggregation.
- Exposed outcome columns selection in the CLI
- Added
--outcome_columnsto choose which columns are treated as outcomes instead of defaulting to all non-id/weight/covariate columns. Remaining columns are moved toignored_columns.
- Added
- Improved missing data handling in
poststratify()poststratify()now acceptsna_actionto either drop rows with missing values or treat missing values as their own category during weighting.- Breaking change: the default behavior now fills missing values in
poststratification variables with
"__NaN__"and treats this as a distinct category during weighting. Previously, missing values were not handled explicitly, and their treatment depended on pandasgroupbyandmergedefaults. To approximate the legacy behavior where missing values do not form their own category, passna_action="drop"explicitly.
- Added formula support for
descriptive_statsmodel matricesdescriptive_stats()now accepts aformulaargument that is always applied to the data (including numeric-only frames), letting callers control which terms and dummy variables are included in summary statistics.
- Documented the balance CLI
- Added full API docstrings for
balance.cliand a new CLI tutorial notebook.
- Added full API docstrings for
- Created Balance CLI tutorial
- Added CLI command echoing, a
load_data()example, and richer diagnostics exploration with metric/variable listings and a browsable diagnostics table. https://import-balance.org/docs/tutorials/balance_cli_tutorial/
- Added CLI command echoing, a
- Synchronized docstring examples with test cases
- Updated user-facing docstrings so the documented examples mirror tested inputs and outputs.
- Added warning when the sample size of 'target' is much larger than 'sample' sample size
Sample.adjust()now warns when the target exceeds 100k rows and is at least 10x larger than the sample, highlighting that uncertainty is dominated by the sample (akin to a one-sample comparison).
- Split util helpers into focused modules
- Broke
balance.utilintobalance.utilssubmodules for easier navigation.
- Broke
- Updated
Sample.__str__()to format weight diagnostics likeSample.summary()- Weight diagnostics (design effect, effective sample size proportion, effective sample size) are now displayed on separate lines instead of comma-separated on one line.
- Replaced "eff." abbreviations with full "effective" word for better readability.
- Improves consistency with
Sample.summary()output format.
- Numerically stable CBPS probabilities
- The CBPS helper now uses a stable logistic transform to avoid exponential overflow warnings during probability computation in constraint checks.
- Silenced pandas observed default warning
- Explicitly sets
observed=Falsein weighted categorical KLD calculations to retain current behavior and avoid future pandas default changes.
- Explicitly sets
- Fixed
plot_qq_categoricalto respect theweightedparameter for target data- Previously, the target weights were always applied regardless of the
weighted=Falsesetting, causing inconsistent behavior between sample and target proportions in categorical QQ plots.
- Previously, the target weights were always applied regardless of the
- Restored CBPS tutorial plots
- Re-enabled scatter plots in the CBPS comparison tutorial notebook while avoiding GitHub Pages rendering errors and pandas colormap warnings. https://import-balance.org/docs/tutorials/comparing_cbps_in_r_vs_python_using_sim_data/
- Clearer validation errors in adjustment helpers
trim_weights()now accepts list/tuple inputs and reports invalid types explicitly.apply_transformations()raises clearer errors for invalid inputs and empty transformations.
- Fixed
model_matrixto drop NA rows when requestedmodel_matrix(add_na=False)now actually drops rows containing NA values while preserving categorical levels, matching the documented behavior.- Previously,
add_na=Falseonly logged a warning without dropping rows; code relying on the old behavior may now see fewer rows and should either handle missingness explicitly or useadd_na=True.
- Aligned formatting toolchain between Meta internal and GitHub CI
- Added
["fbcode/core_stats/balance"]override to Meta's internaltools/lint/pyfmt/config.tomlto useformatter = "black"andsorter = "usort". - This ensures both internal (
pyfmt/arc lint) and external (GitHub Actions) environments use the same Black 25.1.0 formatter, eliminating formatting drift. - Updated CI workflow, pre-commit config, and
requirements-fmt.txtto useblack==25.1.0.
- Added
- Added Pyre type checking to GitHub Actions via
.pyre_configuration.externaland a newpyrejob in the workflow. Tests are excluded due to external typeshed stub differences; library code is fully type-checked. - Added test coverage workflow and badge to README via
.github/workflows/coverage.yml. The workflow collects coverage using pytest-cov, generates HTML and XML reports, uploads them as artifacts, and displays coverage metrics. A coverage badge is now shown in README.md alongside other workflow badges. - Improved test coverage for edge cases and error handling paths
- Added targeted tests for previously uncovered code paths across the library, addressing edge cases including empty inputs, verbose logging, error handling for invalid parameters, and boundary conditions in weighting methods (IPW, CBPS, rake).
- Tests exercise defensive code paths that handle empty DataFrames, NaN convergence values, invalid model types, and non-convergence warnings.
- Split test_util.py into focused test modules
- Split the large
test_util.pyfile (2325 lines) into 5 modular test files that mirror thebalance/utils/structure:test_util_data_transformation.py- Tests for data transformation utilitiestest_util_input_validation.py- Tests for input validation utilitiestest_util_model_matrix.py- Tests for model matrix utilitiestest_util_pandas_utils.py- Tests for pandas utilities (including high cardinality warnings)test_util_logging_utils.py- Tests for logging utilities
- This improves test organization and makes it easier to locate tests for specific utilities.
- Split the large
@neuralsorcerer, @talgalili
- Enhanced adjusted sample summary output
- Richer
Sample.summary()diagnostics- Adjusted sample summary now groups covariate diagnostics, reports design effect alongside ESSP/ESS, and surfaces weighted outcome means when available.
- Warning of high-cardinality categorical features in
.adjust() - Ignored column handling for Sample inputs
Sample.from_frameacceptsignore_columnsfor columns that should remain on the dataframe but be excluded from covariates and outcome statistics. Ignored columns appear inSample.dfand can be retrieved viaSample.ignored_columns().
- Consolidated diagnostics helpers
- Added
_concat_metric_val_var()helper andbalance.util._coerce_scalarfor robust diagnostics row construction and scalar-to-float conversion. - Breaking change:
Sample.diagnostics()for IPW now always emits iteration/intercept summaries plus hyperparameter settings.
- Added
- Early validation of null weight inputs
Sample.from_framenow raisesValueErrorwhen weights containNone,NaN, orpd.NAvalues with count and preview of affected rows.
- Percentile weight trimming across platforms
trim_weights()now computes thresholds via percentile quantiles with explicit clipping bounds for consistent behavior across Python/NumPy versions.- Breaking change: percentile-based clipping may shift by roughly one observation at typical limits.
- IPW diagnostics improvements
- Fixed
multi_classreporting, normalized scalar hyperparameters to floats, removed deprecatedpenaltyargument warnings, and deduplicated metric entries for stable counts across sklearn versions.
- Fixed
- Added Windows and macOS CI testing support
- Expanded GitHub Actions to run on
ubuntu-latest,macos-latest, andwindows-latestfor Python 3.9-3.14. - Added
tempfile_path()context manager for cross-platform temp file handling and configured matplotlib Agg backend viaconftest.py.
- Expanded GitHub Actions to run on
@neuralsorcerer, @talgalili, @wesleytlee
- Propensity modeling beyond static logistic regression
.adjust(method='ipw')now accepts any sklearn classifier via themodelargument, enabling the use of models like random forests and gradient boosting while preserving all existing trimming and diagnostic features. Dense-only estimators and models without linear coefficients are fully supported. Propensity probabilities are stabilized to avoid numerical issues.- Allow customization of logistic regression by passing a configured
:class:
~sklearn.linear_model.LogisticRegressioninstance through themodelargument. Also, the CLI now accepts--ipw_logistic_regression_kwargsJSON to build that estimator directly for command-line workflows.
- Covariate diagnostics
- Added KL divergence calculations for covariate comparisons (numeric and
one-hot categorical), exposed via
sample.covars().kld()alongside linked-sample aggregation support.
- Added KL divergence calculations for covariate comparisons (numeric and
one-hot categorical), exposed via
- Weighting Methods
rake()andpoststratify()now honourweight_trimming_mean_ratioandweight_trimming_percentile, trimming and renormalising weights through the enhancedtrim_weights(..., target_sum_weights=...)API so the documented parameters work as expected (#147).
- Added comprehensive post-stratification tutorial notebook
(
balance_quickstart_poststratify.ipynb) (#141, #142, #143). - Expanded poststratify docstring with clear examples and improved statistical methods documentation (#141).
- Added project badges to README for build status, Python version support, and release tracking (#145).
- Added example of using custom logistic regression and custom sklearn
classifier usage in (
balance_quickstart.ipynb). - Shorten the welcome message (for when importing the package).
-
Raking algorithm refactor
- Removed
ipfndependency and replaced with a vectorized NumPy implementation (_run_ipf_numpy) for iterative proportional fitting, resulting in significant performance improvements and eliminating external dependency (#135).
- Removed
-
IPW method refactoring
- Reduced Cyclomatic Complexity Number (CCN) by extracting repeated code
patterns into reusable helper functions:
_compute_deviance(),_compute_proportion_deviance(),_convert_to_dense_array(). - Removed manual ASMD improvement calculation and now uses existing
compute_asmd_improvement()fromweighted_comparisons_stats.py
- Reduced Cyclomatic Complexity Number (CCN) by extracting repeated code
patterns into reusable helper functions:
-
Type safety improvements
- Migrated 32 Python files from
# pyre-unsafeto# pyre-strictmode, covering core modules, statistics, weighting methods, datasets, and test files - Modernized type hints to PEP 604 syntax (
X | Yinstead ofUnion[X, Y]) across 11 files for improved readability and Python 3.10+ alignment - Type alias definitions in
typing.pyretainUnionsyntax for Python 3.9 compatibility - Enhanced plotting function type safety with
TypedDictdefinitions and proper type narrowing - Replaced assert-based type narrowing with
_assert_type()helper for better error messages and pyre-strict compliance
- Migrated 32 Python files from
-
Renamed BalanceDF to BalanceDF****
- BalanceCovarsDF to BalanceDFCovars
- BalanceOutcomesDF to BalanceDFOutcomes
- BalanceWeightsDF to BalanceDFWeights
- Utility Functions
- Fixed
quantize()to preserve column ordering and use proper TypeError exceptions (#133)
- Fixed
- Statistical Functions
- Fixed division by zero in
asmd_improvement()whenasmd_mean_beforeis zero, now returns0.0for 0% improvement
- Fixed division by zero in
- CLI & Infrastructure
- Replaced deprecated argparse FileType with pathlib.Path (#134)
- Weight Trimming
- Fixed
trim_weights()to consistently returnpd.Serieswithdtype=np.float64and preserve original index across both trimming methods - Fixed percentile-based winsorization edge case:
_validate_limit()now automatically adjusts limits to prevent floating-point precision issues (#144) - Enhanced documentation for
trim_weights()and_validate_limit()with clearer examples and explanations
- Fixed
- Enhanced test coverage for weight trimming with
test_trim_weights_return_type_consistencyand 11 comprehensive tests for_validate_limit()covering edge cases, error conditions, and boundary conditions
@neuralsorcerer, @talgalili, @wesleytlee
- Added a welcome message when importing the package.
- Added 'CHANGELOG' to the docs website. https://import-balance.org/docs/docs/CHANGELOG/
- Fixed plotly figures in all the tutorials. https://import-balance.org/docs/tutorials/
- Support for Python 3.13 + 3.14
- Update setup.py and CI/CD integration to include Python 3.13 and 3.14.
- Remove upper version constraints from numpy, pandas, scipy, and scikit-learn dependencies for Python 3.12+.
@talgalili, @wesleytlee
- Python 3.12 support - Complete support for Python 3.12 alongside existing
Python 3.9, 3.10, and 3.11 support (with CI/CD integration).
- Implemented Python version-specific dependency constraints - Added conditional version ranges for numpy, pandas, scipy, and scikit-learn that vary based on Python version (e.g., numpy>=1.21.0,<2.0 for Python <3.12, numpy>=1.24.0,<2.1 for Python >=3.12)
- Pandas compatibility improvements - Replaced
value_counts(dropna=False)withgroupby().size()in frequency table creation to avoid FutureWarning - Fixed various pandas deprecation warnings and improved DataFrame handling
- Improved raking algorithm - Completely refactored rake weighting from DataFrame-based to array-based ipfn algorithm using multi-dimensional arrays and itertools for better performance and compatibility with latest Python versions. Variables are now automatically alphabetized to ensure consistent results regardless of input order.
- poststratify method enhancement - New
strict_matchingparameter (default True) handles cases where sample cells are not present in target data. When False, issues warning and assigns weight 0 to uncovered samples
- Type annotations - Enhanced Pyre type hints throughout the codebase, particularly in utility functions
- Sample class improvements - Fixed weight type assignment (ensuring float64
type), improved DataFrame manipulation with
.infer_objects(copy=False)for pandas compatibility, and enhanced weight setting logic - Website dependencies - Updated various website dependencies including Docusaurus and related packages
Comprehensive test refactoring, including:
- Enhanced test validation - Added detailed explanations of test methodologies and expected behaviors in docstrings
- Improved test coverage - Tests now include edge cases like NaN handling, different data types, and error conditions
- Improved test organization (more granular) across all test modules (test_stats_and_plots.py, test_balancedf.py, test_ipw.py, test_rake.py, test_cli.py, test_weighted_comparisons_plots.py, test_cbps.py, test_testutil.py, test_adjustment.py, test_util.py, test_sample.py)
- Updated GitHub workflows to include Python 3.12 in build and test matrix
- Fix 261 "pandas deprecation" warnings!
- Added type annotations - Converted test_balancedf.py to pyre-strict with.
- GitHub issue template for support questions - Added structured template to help users ask questions about using the balance package
@talgalili, @wesleytlee, @dependabot
- Dependency on glmnet has been removed, and the
ipwmethod now uses sklearn. - The transition to sklearn should enable support for newer python versions (3.11) as well as the Windows OS!
ipwmethod uses logistic regression with L2-penalties instead of L1-penalties for computational reasons. The transition from glmnet to sklearn and use of L2-penalties will lead to slightly different generated weights compared to previous versions of Balance.- Unfortunately, the sklearn-based
ipwmethod is generally slower than the previous version by 2-5x. Consider using the new argumentslambda_min,lambda_max, andnum_lambdasfor a more efficient search over theipwpenalization space.
- Update license from GPL v2 to MIT license.
- Updated Python and package compatibility. Balance is now compatible with Python 3.11, but no longer compatible with Python 3.8 due to typing errors. Balance is currently incompatible with Python 3.12 due to the removal of distutils.
@wesleytlee, @talgalili, @SarigT
- Fix E721 flake8 issue (see: https://github.com/facebookresearch/balance/actions/runs/5704381365/job/15457952704)
- Remove support for python 3.11 from release.yml
-
Added links to presentation given at ISA 2023.
-
Fixed misc typos.
- Remove support for python 3.11 due to new test failures. This will be the case until glmnet will be replaced by sklearn. hopefully before end of year.
- All plotly functions: add kwargs to pass arguments to update_layout in all plotly figures. This is useful to control width and height of the plot. For example, when wanting to save a high resolution of the image.
- Add a
summarymethods toBalanceWeightsDF(i.e.:Sample.weights().summary()) to easily get access to summary statistics of the survey weights. Also, it means thatSample.diagnostics()now uses this new summary method in its internal implementation. BalanceWeightsDF.plotmethod now relies on the defaultBalanceDF.plotmethod. This means that instead of a static seaborn kde plot we'll get an interactive plotly version.
- datasets
- Remove a no-op in
load_dataand accommodate deprecation of pandas syntax by using a list rather than a set when selecting df columns (thanks @ahakso for the PR). - Make the outcome variable (
happiness) be properly displayed in the tutorials (so we can see the benefit of the weighting process). This included fixing the simulation code in the target.
- Remove a no-op in
- Fix
Sample.outcomes().summary()so it will output the ci columns without truncating them.
- Fix text based on updated from version 0.7.0 and 0.8.0.
- Fix tutorials to include the outcome in the target.
@talgalili, @SarigT, @ahakso
- Add
rakemethod to .adjust (currently in beta, given that it doesn't handles marginal target as input). - Add a new function
prepare_marginal_dist_for_raking- to take in a dict of marginal proportions and turn them into a pandas DataFrame. This can serve as an input target population for raking.
- The
ipwfunction now gets max_de=None as default (instead of 1.5). This version is faster, and the user can still choose a threshold as desired. - Adding hex stickers graphics files
- New section on raking.
- New notebook (in the tutorial section):
- quickstart_rake - like the quickstart tutorial, but shows how to use the rake (raking) algorithm and compares the results to IPW (logistic regression with LASSO).
@talgalili, @SarigT
- Add
plotly_plot_densityfunction: Plots interactive density plots of the given variables using kernel density estimation. - Modified
plotly_plot_distandplot_distto also support 'kde' plots. Also, these are now the default options. This automatically percolates toBalanceDF.plot()methods. Sample.from_framecan now guess that a column called "weights" is a weight column (instead of only guessing so if the column is called "weight").
- Fix
rm_mutual_nas: it now remembers the index of pandas.Series that were used as input. This fixed erroneous plots produced by seaborn functions which uses rm_mutual_nas. - Fix
plot_hist_kdeto work when dist_type = "ecdf" - Fix
plot_hist_kdeandplot_barwhen having an input only with "self" and "target", by fixing_return_sample_palette.
- All plotting functions moved internally to expect weight column to be called
weight, instead ofweights. - All adjust (ipw, cbps, poststratify, null) functions now export a dict with a
key called
weightinstead ofweights.
@talgalili, @SarigT
- Variance of the weighted mean
- Add the
var_of_weighted_meanfunction (from balance.stats_and_plots.weighted_stats import var_of_weighted_mean): Computes the variance of the weighted average (pi estimator for ratio-mean) of a list of values and their corresponding weights.- Added the
var_of_meanoption to stat in thedescriptive_statsfunction (based onvar_of_weighted_mean) - Added the
.var_of_mean()method to BalanceDF.
- Added the
- Add the
ci_of_weighted_meanfunction (from balance.stats_and_plots.weighted_stats import ci_of_weighted_mean): Computes the confidence intervals of the weighted mean using the (just added) variance of the weighted mean.- Added the
ci_of_meanoption to stat in thedescriptive_statsfunction (based onci_of_weighted_mean). Also added kwargs support. - Added the
.ci_of_mean()method to BalanceDF. - Added the
.mean_with_ci()method to BalanceDF. - Updated
.summary()methods to include the output ofci_of_mean.
- Added the
- Add the
- All bar plots now have an added ylim argument to control the limits of the y
axis. For example use:
plot_dist(dfs1, names=["self", "unadjusted", "target"], ylim = (0,1))Or this:s3_null.covars().plot(ylim = (0,1)) - Improve 'choose_variables' function to control the order of the returned
variables
- The return type is now a list (and not a Tuple)
- The order of the returned list is based on the variables argument. If it is not supplied, it is based on the order of the column names in the DataFrames. The df_for_var_order arg controls which df to use.
- Misc
- The
_prepare_input_model_matrixand downstream functions (e.g.:model_matrix,sample.outcomes().mean(), etc) can now handle DataFrame with special characters in the column names, by replacing special characters with '_' (or '_i', if we end up with columns with duplicate names). It also handles cases in which the column names have duplicates (using the new_make_df_column_names_uniquefunction). - Improve choose_variables to control the order of the returned variables
- The return type is now a list (and not a Tuple)
- The order of the returned list is based on the variables argument. If it is not supplied, it is based on column names in the DataFrames. The df_for_var_order arg controls which df to use.
- The
@talgalili, @SarigT
- The
datasets.load_datafunction now also supports the input "sim_data_cbps", which loads the simulated data used in the CBPS R vs Python tutorial. It is also used in unit-testing to compare the CBPS weights produced from Python (i.e.: balance) with R (i.e.: the CBPS package). The testing shows how the correlation of the weights from the two implementations (both Pearson and Spearman) produce a correlation of >0.98. - cli improvements:
- Add an option to set formula (as string) in the cli.
- New notebook (in the tutorial section):
- Comparing results of fitting CBPS between R's
CBPSpackage and Python'sbalancepackage (using simulated data). link
- Comparing results of fitting CBPS between R's
@stevemandala, @talgalili, @SarigT
- Added two new flags to the cli:
--standardize_types: This gives cli users the ability to set thestandardize_typesparameter in Sample.from_frame to True or False. To learn more about this parameter, see: https://import-balance.org/api_reference/html/balance.sample_class.html#balance.sample_class.Sample.from_frame--return_df_with_original_dtypes: the Sample object now stores the dtypes of the original df that was read using Sample.from_frame. This can be used to restore the original dtypes of the file output from the cli. This is relevant in cases in which we want to convert back the dtypes of columns from how they are stored in Sample, to their original types (e.g.: if something was Int32 it would be turned in float32 in balance.Sample, and using the new flag will return that column, when using the cli, to be back in the Int32 type). This feature may not be robust to various edge cases. So use with caution.
- In the logging:
- Added warnings about dtypes changes. E.g.: if using Sample.from_frame with a column that has Int32, it will be turned into float32 in the internal storage of sample. Now there will be a warning message indicating of this change.
- Increase the default length of logger printing (from 500 to 2000)
- Fix pandas warning: SettingWithCopyWarning in from_frame (and other places in sample_class.py)
- sample.from_frame has a new argument
use_deepcopyto decide if changes made to the df inside the sample object would also change the original df that was provided to the sample object. The default is now set toTruesince it's more likely that we'd like to keep the changes inside the sample object to the df contained in it, and not have them spill into the original df.
@SarigT, @talgalili
- Sample.from_frame now also converts int16 and in8 to float16 and float16. Thus
helping to avoid
TypeError: Cannot interpret 'Int16Dtype()' as a data typestyle errors.
- Added ISSUE_TEMPLATE
@talgalili, @stevemandala, @SarigT
- Added compatibility for Python 3.11 (by supporting SciPy 1.9.2) (props to @tomwagstaff-opml for flagging this issue).
- Added the
session-infopackage as a dependency.
- Fixed pip install from source on Windows machines (props to @tomwagstaff-opml for the bug report).
- Added
session_info.show()outputs to the end of the three tutorials (at: https://import-balance.org/docs/tutorials/) - Misc updates to the README.
@stevemandala, @SarigT, @talgalili
- cli improvements:
- Add an option to set weight_trimming_mean_ratio = None for no trimming.
- Add an option to set transformations to be None (i.e. no transformations).
- Add an option to adapt the title in:
- stats_and_plots.weighted_comparison_plots.plot_bar
- stats_and_plots.weighted_comparison_plots.plot_hist_kde
- Fix (and simplify) balanceDF.plot to organize the order of groups (now unadjusted/self is left, adjusted/self center, and target is on the right)
- Fix plotly functions to use the red color for self when only compared to target (since in that case it is likely unadjusted): balance.stats_and_plots.weighted_comparisons_plots.plotly_plot_qq and balance.stats_and_plots.weighted_comparisons_plots.plotly_plot_bar
- Fix seaborn_plot_dist: output None by default (instead of axis object). Added a return_Axes argument to control this behavior.
- Fix some test_cbps tests that were failing due to non-exact matches (we made the test less sensitive)
- New blog section, with the post: Bringing "balance" to your data
- New tutorial:
- quickstart_cbps - like the quickstart tutorial, but shows how to use the CBPS algorithm and compares the results to IPW (logistic regression with LASSO).
- balance_transformations_and_formulas - This tutorial showcases ways in which transformations, formulas and penalty can be included in your pre-processing of the covariates before adjusting for them.
- API docs:
- New: highlighting on codeblocks
- a bunch of text fixes.
- Update README.md
- logo
- with contributors
- typo fixes (props to @zbraiterman and @luca-martial).
- Added section about "Releasing a new version" to CONTRIBUTING.md
- Available under "Docs/Contributing" section of website
- Added automated Github Action package builds & deployment to PyPi on release.
- See release.yml
@stevemandala, @SarigT, @talgalili
- balance released to the world!
@SarigT, @talgalili, @stevemandala