brainsets/pyproject.toml at main · neuro-galaxy/brainsets · GitHub

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[build-system]
requires = ["setuptools>=80", "setuptools-scm[simple]>=8"]
build-backend = "setuptools.build_meta"

[project]
name = "brainsets"
dynamic = ["version"]
description = "A package for processing neural datasets"
readme = "README.md"
authors = [{ name = "TorchBrain Team", email = "contact@torchbrain.org" }]
license = { text = "Apache-2.0" }
classifiers = [
    "Programming Language :: Python :: 3",
    "License :: OSI Approved :: Apache Software License",
    "Operating System :: OS Independent",
]
requires-python = ">=3.10"
dependencies = [
    "temporaldata>=0.1.6",
    "scipy>=1.10.1",
    "pynwb>=2.2.0",
    "pandas>=1.5.3",
    "tqdm>=4.64.1",
    "rich>=13.3.2",
    "click>=8.1.3",
    "pyyaml>=6.0",
    "uv",
    "prompt_toolkit",
    "numpy>=1.14.0",
    "ray>=2.30.0",
    "tomli; python_version < \"3.11\"", # tomllib was not part of stddlib before 3.11
]

[project.optional-dependencies]
dev = [
    "pytest~=7.2.1",
    "black==24.2.0",
    "pre-commit>=3.5.0",
    "flake8",
    "pytest-cov",
    "scikit-learn>=1.6.1",
    "torch_brain==0.1.2",
    "mne~=1.11.0",
    "boto3~=1.41.0",
    "mne-bids",
]

[project.urls]
Homepage = "https://github.com/neuro-galaxy/brainsets"
Issues = "https://github.com/neuro-galaxy/brainsets/issues"
Documentation = "https://brainsets.readthedocs.io/en/latest/"

[project.scripts]
brainsets = "brainsets._cli:cli"

[tool.setuptools]
packages = [
    "brainsets",
    "brainsets.utils",
    "brainsets.taxonomy",  # TODO: Remove after fully deprecating taxonomy
    "brainsets.processing",
    "brainsets.datasets",
    "brainsets._cli",
    "brainsets_pipelines",
]
include-package-data = true