v0.2.2

What's Changed

• Neuroblueprint session and subject folder names by @lauraporta in #30
• Improve homepage of photon-mosaic website by @lauraporta in #31
• Update image source URL in README.md by @lauraporta in #49

Full Changelog: 0.2.1...v0.2.2

v0.2.1

Verified Cellpose 4 support
The new release of the photon-mosaic package adds support for using Suite2p with Cellpose 4, enabling advanced segmentation alongside Suite2p’s registration and extraction tools. Default operations for Cellpose-SAM have been updated to match best practices. Users should review the new configuration options for optimal results when upgrading.

Adds pre-processing fuctionality

Substantial improvement and expansion of the documentation
Adds pre-processing steps (derotation, constrast enhancement)
Adds module to discover the datasets containing tiff files in a specify folder (in order to ingest any data)
Separates suite2p rule in a new smk file
Expands the config file with all parameters for suite2p
Adds small datasets for testing, includes testing with multiple datasets and sessions

Packaging improved, CLI added

Changes project.toml (removes suite2p fork) and adds indication for dev building for CIs
Updates the readme accordingly (installation / configs)
Moves workflow files
Creates a CLI file with some customisations
Updates tests and adds one
Better handling of config and logs

Patch on website homepage

0.1.1

Explain a little more the configuration file

Minimal working version with suite2p

0.1.0

Restore linkcheck ignore for zulip