Merge pull request #62 from neuromatch/release-v0.2.0

Release v0.2.0

Author: iamzoltan

.github/actions/check-notebooks/action.yaml

@@ -14,6 +14,12 @@ inputs:
     required: false
     default: false
     type: string
+  cdsapi_uid:
+    description: 'CDSAPI UID'
+    required: true
+  cdsapi_key:
+    description: 'CDSAPI Key'
+    required: true
 
 runs:
   using: composite
@@ -47,6 +53,8 @@ runs:
       if: "!contains(env.COMMIT_MESSAGE, 'skip ci')"
       id: changed-files
       uses: tj-actions/changed-files@v35
+      with:
+        files_ignore: projects/archive/*
 
     - name: List all changed files
       run: |
@@ -79,6 +87,10 @@ runs:
       id: process_notebooks
       if: ${{ env.NBS != '' }}
       run: |
+        # process notebooks
+        # add cdsapi credentials for projects
+        echo "url: https://cds.climate.copernicus.eu/api/v2" >> /home/runner/.cdsapirc
+        echo "key: ${{ inputs.cdsapi_uid }}:${{ inputs.cdsapi_key }}" >> /home/runner/.cdsapirc
         python ci/process_notebooks.py ${{ env.NBS }} ${{ inputs.exec_flag}}
       shell: bash -l {0}
 

.github/actions/setup/action.yaml

@@ -133,12 +133,16 @@ runs:
     - name: Update environment
       if: ${{steps.cache-python.outputs.cache-hit != 'true' || inputs.force_env_update == 'true'}}
       run: |
+        # Install python dependencies
         # mamba env update -n climatematch -f environment.yml
         pip install -r ci/requirements.txt
         pip install -r requirements.txt
+        pip install ecmwflibs
+        pip install eccodes==1.3.1
+        pip install cfgrib
+        python -m cfgrib selfcheck
         pip install requests aiohttp
         pip install jupyter-book==0.14.0 ghp-import cftime pyleoclim importlib-metadata==4.13.0
-        # pip install climlab==0.8.2
       shell: bash -l {0}
 
     - name: Build climlab from source

.github/workflows/notebook-pr.yaml

@@ -59,6 +59,8 @@ jobs:
           # exec_flag: '--check-only'
           exec_flag: '--execute'
           # exercise-continue-on-error: true
+          cdsapi_uid: ${{ secrets.CDSAPI_UID }}
+          cdsapi_key: ${{ secrets.CDSAPI_KEY }}
 
       # - name: Add PR comment
       #   if: ${{ env.NBS != '' }}

.gitignore

@@ -1,4 +1,6 @@
 book/_build/
+*.grib
+*.idx
 *.nc
 *.csv
 .ipynb_checkpoints/

…t_on_precipitation_and_temperature.ipynb …t_on_precipitation_and_temperature.ipynbprojects/project-notebooks/ENSO_impact_on_precipitation_and_temperature.ipynb renamed to projects/archive/ENSO_impact_on_precipitation_and_temperature.ipynb projects/project-notebooks/ENSO_impact_on_precipitation_and_temperature.ipynb renamed to projects/archive/ENSO_impact_on_precipitation_and_temperature.ipynb

@@ -1,6 +1,6 @@
 {
  "cells": [
- {
+  {
    "cell_type": "markdown",
    "metadata": {
     "execution": {}
@@ -554,7 +554,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.11"
+   "version": "3.9.16"
   }
  },
  "nbformat": 4,