the kwyk container with master-gpu tag has errors #33
Description
when running the container with the master-gpu tag, I am getting the TensorFlow import error.
command: singularity run -B $(pwd):/data -W /data kwyk_master-gpu.sif --help
error:
Traceback (most recent call last):
File "/usr/local/lib/python3.5/dist-packages/tensorflow/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/usr/local/lib/python3.5/dist-packages/tensorflow/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/usr/local/lib/python3.5/dist-packages/tensorflow/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/usr/lib/python3.5/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/usr/lib/python3.5/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libcuda.so.1: cannot open shared object file: No such file or directory
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.5/dist-packages/nobrainer/__init__.py", line 9, in <module>
import tensorflow
File "/usr/local/lib/python3.5/dist-packages/tensorflow/__init__.py", line 24, in <module>
from tensorflow.python import pywrap_tensorflow # pylint: disable=unused-import
File "/usr/local/lib/python3.5/dist-packages/tensorflow/python/__init__.py", line 49, in <module>
from tensorflow.python import pywrap_tensorflow
File "/usr/local/lib/python3.5/dist-packages/tensorflow/python/pywrap_tensorflow.py", line 74, in <module>
raise ImportError(msg)
ImportError: Traceback (most recent call last):
File "/usr/local/lib/python3.5/dist-packages/tensorflow/python/pywrap_tensorflow.py", line 58, in <module>
from tensorflow.python.pywrap_tensorflow_internal import *
File "/usr/local/lib/python3.5/dist-packages/tensorflow/python/pywrap_tensorflow_internal.py", line 28, in <module>
_pywrap_tensorflow_internal = swig_import_helper()
File "/usr/local/lib/python3.5/dist-packages/tensorflow/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
_mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
File "/usr/lib/python3.5/imp.py", line 242, in load_module
return load_dynamic(name, filename, file)
File "/usr/lib/python3.5/imp.py", line 342, in load_dynamic
return _load(spec)
ImportError: libcuda.so.1: cannot open shared object file: No such file or directory
Failed to load the native TensorFlow runtime.
See https://www.tensorflow.org/install/errors
for some common reasons and solutions. Include the entire stack trace
above this error message when asking for help.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/bin/kwyk", line 33, in <module>
sys.exit(load_entry_point('kwyk', 'console_scripts', 'kwyk')())
File "/usr/local/bin/kwyk", line 25, in importlib_load_entry_point
return next(matches).load()
File "/usr/local/lib/python3.5/dist-packages/importlib_metadata/__init__.py", line 105, in load
module = import_module(match.group('module'))
File "/usr/lib/python3.5/importlib/__init__.py", line 126, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "<frozen importlib._bootstrap>", line 986, in _gcd_import
File "<frozen importlib._bootstrap>", line 969, in _find_and_load
File "<frozen importlib._bootstrap>", line 958, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 673, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 665, in exec_module
File "<frozen importlib._bootstrap>", line 222, in _call_with_frames_removed
File "/opt/kwyk/kwyk/cli.py", line 10, in <module>
from nobrainer.predict import _get_predictor
File "/usr/local/lib/python3.5/dist-packages/nobrainer/__init__.py", line 12, in <module>
"TensorFlow cannot be found. Please re-install nobrainer with either"
ImportError: TensorFlow cannot be found. Please re-install nobrainer with either the [cpu] or [gpu] extras, or install TensorFlow separately. Please see https://www.tensorflow.org/install/ for installation instructions.