ngtools-pyodide/pyproject.toml at main · neuroscales/ngtools-pyodide · GitHub

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[project]
name = "ngtools-pyodide"
authors = [{name = "Yael Balbastre", email = "y.balbastre@ucl.ac.uk"}]
maintainers = [{name = "Yael Balbastre", email = "y.balbastre@ucl.ac.uk"}]
description = "Build and manipulate Neuroglancer scenes"
readme = "README.md"
license-files = ["LICENSE"]
classifiers = [
    "Operating System :: OS Independent",
    "Programming Language :: Python :: 3",
    "Intended Audience :: Science/Research",
    "Topic :: Scientific/Engineering :: Medical Science Apps.",
    "Topic :: Scientific/Engineering :: Visualization"
]
requires-python = ">=3.10"
dependencies = [
    # "numpy >= 1.20",               # // np.typing
    "fsspec[full] >= 2021.0.0",    # // first stable release
    "cryptography >= 36.0.2",      # // from boto3, see issue #32
    "universal_pathlib",           # UPath
    # "nibabel",                     # io nifti
    "tifffile",                    # io tiff
    # neuroglancer dependencies:
    "atomicwrites>=1.4.1",
    "google-apitools>=0.5.32",
    "google-auth>=2.38.0",
    "numpy>=1.11.0",
    "pillow>=3.2.0",
    "requests>=2.32.3",
    # nitransforms dependencies:
    "numpy", #  >= 2.1
    "scipy >= 1.8",
    "nibabel >= 5.2",
]
dynamic = ["version"]


[project.urls]
Homepage = "https://github.com/neuroscales/ngtools-pyodide"
Issues = "https://github.com/neuroscales/ngtools-pyodide/issues"

[project.scripts]
nglocal = "ngtools.local.cli:main"
ngtools = "ngtools.local.cli:main"
neuroglancer = "ngtools.local.cli:main"

[build-system]
requires = [
    "setuptools >= 61.0",
    "wheel",
    "versioningit >= 1.0",
]
build-backend = "setuptools.build_meta"

[tool.setuptools]
package-dir = {"" = "src"}

[tool.versioningit]
default-version = "0+unknown"

[tool.versioningit.format]
# Same format as versioneer
distance = "{base_version}+{distance}.{vcs}{rev}"
dirty = "{base_version}+{distance}.{vcs}{rev}.dirty"
distance-dirty = "{base_version}+{distance}.{vcs}{rev}.dirty"

[tool.versioningit.write]
file = "src/ngtools/_version.py"

[tool.pytest.ini_options]
pythonpath = [
    "src"
]
testpaths = [
    "src/ngtools/tests"
]

[tool.mypy]
ignore_missing_imports = true

[tool.ruff]
exclude = [
    ".bzr",
    ".direnv",
    ".eggs",
    ".git",
    ".git-rewrite",
    ".hg",
    ".mypy_cache",
    ".nox",
    ".pants.d",
    ".pytype",
    ".ruff_cache",
    ".svn",
    ".tox",
    ".venv",
    "__pypackages__",
    "_build",
    "buck-out",
    "build",
    "dist",
    "node_modules",
    "venv"
]
line-length = 88
indent-width = 4
src = ["."]
target-version = "py310"

[tool.ruff.lint]
select = ["ANN", "D", "E", "F", "I"]
ignore = [
    "ANN002",  # args should not be annotated
    "ANN003",  # kwargs should not be annotated
    "ANN101",  # self should not be annotated.
    "ANN102",  # cls should not be annotated.
    "D105",    # Missing docstring in magic method
    "D205"     # 1 blank line required between summary line and description -> triggered in __init__ docstrings
]
fixable = ["ALL"]
unfixable = []
dummy-variable-rgx = "^(_+|(_+[a-zA-Z0-9_]*[a-zA-Z0-9]+?))$"

[tool.ruff.lint.pydocstyle]
convention = "numpy"

[tool.ruff.lint.per-file-ignores]
"ngtools/tests/*.py" = []

[tool.ruff.format]
quote-style = "double"
indent-style = "space"
skip-magic-trailing-comma = false
line-ending = "auto"