Merge pull request #133 from neuroscout/fix/uploads

Fix upload grabbing

Author: adelavega

neuroscout_cli/__init__.py

@@ -1 +1 @@
-__version__ = '0.5.2'
+__version__ = '0.5.3'

neuroscout_cli/commands/run.py

@@ -43,7 +43,7 @@ def run(self, upload_only=False):
                 str(out_dir),
                 'dataset',
                 f'--model={model_path}',
-                '--ignore=/(.*desc-confounds_regressors.tsv)/',
+                '--ignore=/(.*desc-confounds_regressors.*)/',
                 f'--derivatives={str(self.bundle_dir.absolute())} {str(self.preproc_dir.absolute())}',
                 f'--smoothing={smoothing}:Dataset',
                 f'--estimator={estimator}'
@@ -109,11 +109,11 @@ def run(self, upload_only=False):
 
             group = [str(i) for i in images.glob('*statmap.nii.gz')
                      if re.match(
-                         '.*stat-[t|F|variance|effect]+.*', i.name)]
+                         '.*stat-(t|F|variance|effect)+.*', i.name)]
 
             if neurovault == 'all':
                 sub = [str(i) for i in images.glob('sub*/*statmap.nii.gz')
-                       if re.match('.*stat-[variance|effect]+.*', i.name)]
+                       if re.match('.*stat-(variance|effect)+.*', i.name)]
             else:
                 sub = None
 

requirements.txt

@@ -1,5 +1,5 @@
 docopt==0.6.2
 datalad==0.10.2
 tqdm
-pyns==0.4.6
+pyns==0.4.7
 git+https://github.com/bids-standard/pybids.git@maint/0.13.x