0.2.1rc2

What's Changed

Other Changes

• [FIX] bump min numpy/seaborn versions by @jdkent in #861

Full Changelog: 0.2.1rc1...0.2.1rc2

0.2.1rc1

What's Changed

🎉 Exciting New Features

• Implement caching for Estimators and Transformers by @JulioAPeraza in #845
• Add similarity correlation matrix figure to IBMA reports by @JulioAPeraza in #852
• Support liberal mask in IBMA estimators by @JulioAPeraza in #848
• Add DoF map to IBMA report by @JulioAPeraza in #854

👎 Deprecations

• Deprecate ale_sleuth_workflow in favor of CBMAWorkflow and PairwiseCBMAWorkflow by @JulioAPeraza in #851

Other Changes

• Disable computation of probabilities by default for MKDAChi2 by @adelavega in #856
• Optimize compute_kda_ma for memory and speed by @adelavega in #857
• [FIX] do not check id columns for image extensions by @jdkent in #860

Full Changelog: 0.2.0...0.2.1rc1

0.2.0

What's Changed

🎉 Exciting New Features

• Add Workflow and CBMAWorkflow classes. Support pairwise CBMA workflows by @JulioAPeraza in #809
• Remove resample argument from IBMA estimators by @JulioAPeraza in #823
• Add IBMAWorkflow by @JulioAPeraza in #817
• Make torch optional by @JulioAPeraza in #836
• Add Conjunction Analysis Workflow by @JulioAPeraza in #841

🐛 Bug Fixes

• Fix the aspect ratio and size of the heatmap in Reports by @JulioAPeraza in #815
• Addresses new RTD configuration file requirements by @JulioAPeraza in #829
• Fix compatibility of ImageTransformer with Pandas 2.1.2 by @JulioAPeraza in #843
• [FIX] handle index errors by @jdkent in #839
• [FIX] regular expression for no moderators by @jdkent in #821
• Fix the NeuroLibre badge by @tsalo in #824
• [FIX] handle null values in metadata by @jdkent in #831

Other Changes

• Add badges and citations for Aperture Neuro article by @tsalo in #834
• Remove pytorch warning message by @yifan0330 in #828

Full Changelog: 0.1.1...0.2.0

0.2.0rc3

What's Changed

🎉 Exciting New Features

• Remove resample argument from IBMA estimators by @JulioAPeraza in #823
• Add IBMAWorkflow by @JulioAPeraza in #817
• Make torch optional by @JulioAPeraza in #836

🐛 Bug Fixes

• Addresses new RTD configuration file requirements by @JulioAPeraza in #829

Other Changes

• Fix the NeuroLibre badge by @tsalo in #824
• [FIX] handle null values in metadata by @jdkent in #831
• Add badges and citations for Aperture Neuro article by @tsalo in #834
• Remove pytorch warning message by @yifan0330 in #828
• [FIX] handle index errors by @jdkent in #839

Full Changelog: 0.2.0rc2...0.2.0rc3

0.2.0rc2

What's Changed

Other Changes

• [FIX] regular expression for no moderators by @jdkent in #821

Full Changelog: 0.2.0rc1...0.2.0rc2

0.2.0rc1

What's Changed

🎉 Exciting New Features

• Add Workflow and CBMAWorkflow classes. Support pairwise CBMA workflows by @JulioAPeraza in #809

🐛 Bug Fixes

• Fix the aspect ratio and size of the heatmap in Reports by @JulioAPeraza in #815

Full Changelog: 0.1.1...0.2.0rc1

0.1.1

Main change is to include default.yml and default.tpl in the python package distribution

What's Changed

🎉 Exciting New Features

• Combine analyses in Studyset by @JulioAPeraza in #810

Other Changes

• [FIX] include default.yml as part of nimare package by @jdkent in #812

Full Changelog: 0.1.0...0.1.1

0.1.1rc1

Release to fix the run_reports function, so that default.yml is included as a part of the package.

What's Changed

🎉 Exciting New Features

• Combine analyses in Studyset by @JulioAPeraza in #810

Other Changes

• [FIX] include default.yml as part of nimare package by @jdkent in #812

Full Changelog: 0.1.0...0.1.1rc1

0.1.0

What's Changed

This is a big release, there are several large items we added:

• Coordinate Based Meta Regression! This is a great alternative to the kernel-based methods to detect convergence with more sensitivity and more flexibly compare between groups.
• Reports Module: now you can generate an html report for the simple kernel based methods, more estimators will be supported in upcoming releases

🎉 Exciting New Features

• [ENH] Support pre-generated maps in CorrelationDecoder by @JulioAPeraza in #782
• [ENH] add Coordinate Based Meta Regression by @yifan0330 in #721
• [ENH] Add Corrector and Diagnostics attributes to MetaResult object by @JulioAPeraza in #804
• [ENH] Add NiMAREBase features to the Corrector base class by @JulioAPeraza in #807
• [ENH] Add reports module by @JulioAPeraza in #802

🐛 Bug Fixes

• [FIX] Set n_iters defaults only for estimators with null_method="montecarlo" by @JulioAPeraza in #803
• [FIX] handle case of no sample size being reported by @jdkent in #792
• [FIX] math display by @yifan0330 in #805
• [FIX] allow analysis to have null points when converting from nimads to dataset by @jdkent in #808

Other Changes

• [MAINT] Drop support for Python 3.6 and 3.7 by @JulioAPeraza in #780
• [MAINT] remove codecov by @jdkent in #788
• [DOC] change readthedocs badge from latest to stable by @jdkent in #786
• [DOC] Add neurolibre link by @jdkent in #789
• [MAINT] make indexed_gzip install optional by @jdkent in #791
• [MAINT] Remove RC versions from Changelog by @JulioAPeraza in #790
• [MAINT] Unpin numpy version by @JulioAPeraza in #794
• [REF] Replace _get_clusters_table with nilearn's get_clusters_table by @JulioAPeraza in #793
• [MAINT] Support Python 3.11 by @JulioAPeraza in #796
• [MAINT] fix readthedocs by @jdkent in #797

Full Changelog: 0.0.14...0.1.0

0.0.14

What's Changed

🛠 Breaking Changes

• Support clusters table in Diagnostics by @JulioAPeraza in #765

🎉 Exciting New Features

• Add save() and load() methods to MetaResult objects by @JulioAPeraza in #771
• Incorporate Estimator and Corrector descriptions into MetaResult objects by @tsalo in #724
• Add cluster_threshold option to Diagnostics by @JulioAPeraza in #777
• Add CBMA workflow by @JulioAPeraza in #761

🐛 Bug Fixes

• Do not zero out one-tailed z-statistics for p-values > 0.5 by @JulioAPeraza in #693

Other Changes

• Support nibabel 5.0.0 by @JulioAPeraza in #762
• Link to NeuroStars software support category instead of neuro questions by @tsalo in #768
• Revert "Do not zero out one-tailed z-statistics for p-values > 0.5" by @JulioAPeraza in #769
• [DOC] add note about SDM by @jdkent in #764
• Replace pandas.DataFrame.append with pandas.concat by @JulioAPeraza in #774
• [ENH] rudimentary support for nimads by @jdkent in #763
• Major refactoring of Diagnostics module by @JulioAPeraza in #776
• [DOC] add proper documentation to nimads module by @jdkent in #778

Full Changelog: 0.0.13...0.0.14