add migrations to vcs

Author: jdkent

compose/backend/migrations/versions/0717f5de725b_.py

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+"""empty message
+
+Revision ID: 0717f5de725b
+Revises: c1fb13263539
+Create Date: 2023-12-12 22:59:12.319399
+
+"""
+from alembic import op
+import sqlalchemy as sa
+import sqlalchemy_utils
+
+
+# revision identifiers, used by Alembic.
+revision = '0717f5de725b'
+down_revision = 'c1fb13263539'
+branch_labels = None
+depends_on = None
+
+
+def upgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.add_column('specification_conditions', sa.Column('user_id', sa.Text(), nullable=True))
+    op.create_foreign_key(None, 'specification_conditions', 'users', ['user_id'], ['external_id'])
+    op.add_column('specifications', sa.Column('database_studyset', sa.Text(), nullable=True))
+    # ### end Alembic commands ###
+
+
+def downgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.drop_column('specifications', 'database_studyset')
+    op.drop_constraint(None, 'specification_conditions', type_='foreignkey')
+    op.drop_column('specification_conditions', 'user_id')
+    # ### end Alembic commands ###

compose/backend/migrations/versions/164fb969f549_.py

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+"""empty message
+
+Revision ID: 164fb969f549
+Revises: e1c296d89bf1
+Create Date: 2023-05-18 19:15:07.407065
+
+"""
+from alembic import op
+import sqlalchemy as sa
+import sqlalchemy_utils
+
+
+# revision identifiers, used by Alembic.
+revision = '164fb969f549'
+down_revision = 'e1c296d89bf1'
+branch_labels = None
+depends_on = None
+
+
+def upgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.add_column('meta_analysis_results', sa.Column('diagnostic_table', sa.Text(), nullable=True))
+    # ### end Alembic commands ###
+
+
+def downgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.drop_column('meta_analysis_results', 'diagnostic_table')
+    # ### end Alembic commands ###

compose/backend/migrations/versions/26aa47ee8e3e_.py

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+"""empty message
+
+Revision ID: 26aa47ee8e3e
+Revises: 76c16b00a2bc
+Create Date: 2022-12-16 18:22:04.536097
+
+"""
+from alembic import op
+import sqlalchemy as sa
+import sqlalchemy_utils
+
+
+# revision identifiers, used by Alembic.
+revision = '26aa47ee8e3e'
+down_revision = '76c16b00a2bc'
+branch_labels = None
+depends_on = None
+
+
+def upgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.create_table('projects',
+    sa.Column('id', sa.Text(), nullable=False),
+    sa.Column('created_at', sa.DateTime(timezone=True), server_default=sa.text('now()'), nullable=True),
+    sa.Column('updated_at', sa.DateTime(timezone=True), nullable=True),
+    sa.Column('name', sa.Text(), nullable=True),
+    sa.Column('description', sa.Text(), nullable=True),
+    sa.Column('provenance', sa.JSON(), nullable=True),
+    sa.Column('user_id', sa.Text(), nullable=True),
+    sa.ForeignKeyConstraint(['user_id'], ['users.external_id'], ),
+    sa.PrimaryKeyConstraint('id')
+    )
+    op.add_column('meta_analyses', sa.Column('project_id', sa.Text(), nullable=True))
+    op.add_column('meta_analyses', sa.Column('provenance', sa.JSON(), nullable=True))
+    op.create_foreign_key(None, 'meta_analyses', 'projects', ['project_id'], ['id'])
+    # ### end Alembic commands ###
+
+
+def downgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.drop_constraint(None, 'meta_analyses', type_='foreignkey')
+    op.drop_column('meta_analyses', 'provenance')
+    op.drop_column('meta_analyses', 'project_id')
+    op.drop_table('projects')
+    # ### end Alembic commands ###

compose/backend/migrations/versions/28251f5cb6d5_.py

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+"""empty message
+
+Revision ID: 28251f5cb6d5
+Revises: 3d0fc483f06b
+Create Date: 2025-10-13 19:11:58.785877
+
+"""
+from alembic import op
+import sqlalchemy as sa
+import sqlalchemy_utils
+
+
+# revision identifiers, used by Alembic.
+revision = '28251f5cb6d5'
+down_revision = '3d0fc483f06b'
+branch_labels = None
+depends_on = None
+
+
+def upgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    with op.batch_alter_table('projects', schema=None) as batch_op:
+        batch_op.add_column(sa.Column('studyset_id', sa.Text(), nullable=True))
+        batch_op.add_column(sa.Column('annotation_id', sa.Text(), nullable=True))
+        batch_op.create_foreign_key(None, 'annotations', ['annotation_id'], ['id'])
+        batch_op.create_foreign_key(None, 'studysets', ['studyset_id'], ['id'])
+
+    # ### end Alembic commands ###
+
+
+def downgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    with op.batch_alter_table('projects', schema=None) as batch_op:
+        batch_op.drop_constraint(None, type_='foreignkey')
+        batch_op.drop_constraint(None, type_='foreignkey')
+        batch_op.drop_column('annotation_id')
+        batch_op.drop_column('studyset_id')
+
+    # ### end Alembic commands ###

compose/backend/migrations/versions/3d0fc483f06b_.py

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+"""empty message
+
+Revision ID: 3d0fc483f06b
+Revises: 52eabbbdffe6
+Create Date: 2025-08-21 22:16:48.621497
+
+"""
+from alembic import op
+import sqlalchemy as sa
+import sqlalchemy_utils
+
+
+# revision identifiers, used by Alembic.
+revision = '3d0fc483f06b'
+down_revision = '52eabbbdffe6'
+branch_labels = None
+depends_on = None
+
+
+def upgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.create_index(op.f('ix_projects_draft'), 'projects', ['draft'], unique=False)
+    op.create_index(op.f('ix_projects_public'), 'projects', ['public'], unique=False)
+    op.create_index(op.f('ix_projects_user_id'), 'projects', ['user_id'], unique=False)
+    # ### end Alembic commands ###
+
+
+def downgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.drop_index(op.f('ix_projects_user_id'), table_name='projects')
+    op.drop_index(op.f('ix_projects_public'), table_name='projects')
+    op.drop_index(op.f('ix_projects_draft'), table_name='projects')
+    # ### end Alembic commands ###

compose/backend/migrations/versions/49a5cb9f13f2_.py

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+"""empty message
+
+Revision ID: 49a5cb9f13f2
+Revises: 6297073f6fcd
+Create Date: 2023-10-04 16:33:06.160009
+
+"""
+from alembic import op
+import sqlalchemy as sa
+import sqlalchemy_utils
+
+
+# revision identifiers, used by Alembic.
+revision = '49a5cb9f13f2'
+down_revision = '6297073f6fcd'
+branch_labels = None
+depends_on = None
+
+
+def upgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.add_column('specifications', sa.Column('contrast', sa.JSON(), nullable=True))
+    # ### end Alembic commands ###
+
+
+def downgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.drop_column('specifications', 'contrast')
+    # ### end Alembic commands ###

compose/backend/migrations/versions/52eabbbdffe6_.py

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+"""empty message
+
+Revision ID: 52eabbbdffe6
+Revises: 0717f5de725b
+Create Date: 2024-06-15 16:44:18.644557
+
+"""
+from alembic import op
+import sqlalchemy as sa
+import sqlalchemy_utils
+
+
+# revision identifiers, used by Alembic.
+revision = '52eabbbdffe6'
+down_revision = '0717f5de725b'
+branch_labels = None
+depends_on = None
+
+
+def upgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.add_column('projects', sa.Column('draft', sa.Boolean(), nullable=True))
+    # ### end Alembic commands ###
+
+
+def downgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.drop_column('projects', 'draft')
+    # ### end Alembic commands ###

compose/backend/migrations/versions/6297073f6fcd_.py

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+"""empty message
+
+Revision ID: 6297073f6fcd
+Revises: 164fb969f549
+Create Date: 2023-10-04 13:36:36.588979
+
+"""
+from alembic import op
+import sqlalchemy as sa
+import sqlalchemy_utils
+from sqlalchemy.dialects import postgresql
+
+# revision identifiers, used by Alembic.
+revision = '6297073f6fcd'
+down_revision = '164fb969f549'
+branch_labels = None
+depends_on = None
+
+
+def upgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.create_table('conditions',
+    sa.Column('id', sa.Text(), nullable=False),
+    sa.Column('created_at', sa.DateTime(timezone=True), server_default=sa.text('now()'), nullable=True),
+    sa.Column('updated_at', sa.DateTime(timezone=True), nullable=True),
+    sa.Column('name', sa.Text(), nullable=True),
+    sa.Column('description', sa.Text(), nullable=True),
+    sa.PrimaryKeyConstraint('id')
+    )
+    op.create_table('specification_conditions',
+    sa.Column('id', sa.Text(), nullable=False),
+    sa.Column('created_at', sa.DateTime(timezone=True), server_default=sa.text('now()'), nullable=True),
+    sa.Column('updated_at', sa.DateTime(timezone=True), nullable=True),
+    sa.Column('weight', sa.Float(), nullable=True),
+    sa.Column('specification_id', sa.Text(), nullable=False),
+    sa.Column('condition_id', sa.Text(), nullable=False),
+    sa.ForeignKeyConstraint(['condition_id'], ['conditions.id'], ),
+    sa.ForeignKeyConstraint(['specification_id'], ['specifications.id'], ),
+    sa.PrimaryKeyConstraint('id', 'specification_id', 'condition_id')
+    )
+    op.create_index(op.f('ix_specification_conditions_condition_id'), 'specification_conditions', ['condition_id'], unique=False)
+    op.create_index(op.f('ix_specification_conditions_specification_id'), 'specification_conditions', ['specification_id'], unique=False)
+    op.drop_column('specifications', 'contrast')
+    op.add_column('studyset_references', sa.Column('created_at', sa.DateTime(timezone=True), server_default=sa.text('now()'), nullable=True))
+    op.add_column('studyset_references', sa.Column('updated_at', sa.DateTime(timezone=True), nullable=True))
+    op.add_column('studysets', sa.Column('version', sa.Text(), nullable=True))
+    # ### end Alembic commands ###
+
+
+def downgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.drop_column('studysets', 'version')
+    op.drop_column('studyset_references', 'updated_at')
+    op.drop_column('studyset_references', 'created_at')
+    op.add_column('specifications', sa.Column('contrast', postgresql.JSON(astext_type=sa.Text()), autoincrement=False, nullable=True))
+    op.drop_index(op.f('ix_specification_conditions_specification_id'), table_name='specification_conditions')
+    op.drop_index(op.f('ix_specification_conditions_condition_id'), table_name='specification_conditions')
+    op.drop_table('specification_conditions')
+    op.drop_table('conditions')
+    # ### end Alembic commands ###

compose/backend/migrations/versions/685f12e01296_.py

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+"""empty message
+
+Revision ID: 685f12e01296
+Revises: 26aa47ee8e3e
+Create Date: 2023-02-16 17:31:51.608961
+
+"""
+from alembic import op
+import sqlalchemy as sa
+import sqlalchemy_utils
+
+
+# revision identifiers, used by Alembic.
+revision = '685f12e01296'
+down_revision = '26aa47ee8e3e'
+branch_labels = None
+depends_on = None
+
+
+def upgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.create_table('meta_analysis_results',
+    sa.Column('id', sa.Text(), nullable=False),
+    sa.Column('created_at', sa.DateTime(timezone=True), server_default=sa.text('now()'), nullable=True),
+    sa.Column('updated_at', sa.DateTime(timezone=True), nullable=True),
+    sa.Column('meta_analysis_id', sa.Text(), nullable=True),
+    sa.Column('neurostore_id', sa.Text(), nullable=True),
+    sa.Column('cli_version', sa.Text(), nullable=True),
+    sa.Column('cli_args', sa.JSON(), nullable=True),
+    sa.ForeignKeyConstraint(['meta_analysis_id'], ['meta_analyses.id'], ),
+    sa.PrimaryKeyConstraint('id'),
+    sa.UniqueConstraint('neurostore_id')
+    )
+    op.create_table('neurovault_collections',
+    sa.Column('id', sa.Text(), nullable=False),
+    sa.Column('created_at', sa.DateTime(timezone=True), server_default=sa.text('now()'), nullable=True),
+    sa.Column('updated_at', sa.DateTime(timezone=True), nullable=True),
+    sa.Column('collection_id', sa.Integer(), nullable=True),
+    sa.Column('result_id', sa.Text(), nullable=True),
+    sa.ForeignKeyConstraint(['result_id'], ['meta_analysis_results.id'], ),
+    sa.PrimaryKeyConstraint('id'),
+    sa.UniqueConstraint('collection_id'),
+    sa.UniqueConstraint('result_id')
+    )
+    op.create_table('neurovault_file',
+    sa.Column('id', sa.Text(), nullable=False),
+    sa.Column('created_at', sa.DateTime(timezone=True), server_default=sa.text('now()'), nullable=True),
+    sa.Column('updated_at', sa.DateTime(timezone=True), nullable=True),
+    sa.Column('collection_id', sa.Integer(), nullable=False),
+    sa.Column('image_id', sa.Integer(), nullable=True),
+    sa.Column('exception', sa.Text(), nullable=True),
+    sa.Column('traceback', sa.Text(), nullable=True),
+    sa.Column('status', sa.Text(), nullable=True),
+    sa.CheckConstraint("status IN ('OK', 'FAILED', 'PENDING')"),
+    sa.ForeignKeyConstraint(['collection_id'], ['neurovault_collections.collection_id'], ),
+    sa.PrimaryKeyConstraint('id'),
+    sa.UniqueConstraint('image_id')
+    )
+    # ### end Alembic commands ###
+
+
+def downgrade():
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.drop_table('neurovault_file')
+    op.drop_table('neurovault_collections')
+    op.drop_table('meta_analysis_results')
+    # ### end Alembic commands ###