v0.1: First official release

What's Changed

This is the first versioned release of neurostore. The main items implemented are:

• backend for storing coordinate/image based studies (neurostore.org)
• backend for creating meta-analyses (compose.neurosynth.org)
• frontend for interfacing with both backends
  This release represents a functional website for using previously ingested studies to create studysets, specify meta-analyses and run those meta-analyses on a google collab notebook.

• [REF] Set up docker-compose, and other boilerplate by @adelavega in #3
• [REF] Move to Python 3.8, add tests by @adelavega in #8
• [REF] Drop Flask-Restful by @adelavega in #9
• [ENH] Remove initialization of database by @jdkent in #16
• [FIX] DockerTestConfig by @jdkent in #15
• [ENH] Add OpenAPI Specification by @jdkent in #19
• [ENH, FIX] Deploy behind nginx-proxy by @tyarkoni in #24
• [ENH] post/get datasets by @jdkent in #29
• [REF] use id's only instead of IRIs by @jdkent in #26
• [STY] run black and check style with flake8 by @jdkent in #30
• [ENH] add login by @jdkent in #33
• [ENH] Add cloning functionality by @jdkent in #36
• [FIX] neurovault ingestion by @jdkent in #39
• [ENH] Add Condition POST by @jdkent in #40
• [FIX] minor fixes by @jdkent in #57
• [FIX] reference original parent when cloning by @jdkent in #58
• [FIX] conform test cases to openapi standard by @jdkent in #61
• [REF] use Auth0 for authentication by @jdkent in #67
• [ENH] pagination by @jdkent in #72
• [FIX] urls in example_config by @jdkent in #78
• [FIX] cloning studies with images by @jdkent in #80
• [REF] add query parameters and filters to display only original studies by @jdkent in #82
• [ENH] New neurosynth format by @jdkent in #86
• [REF] merge the frontend with the backend by @nicoalee in #88
• [FIX] Do no include id in PUT requests by @jdkent in #90
• [REF] database changes by @jdkent in #93
• [ENH] Ingestion by @jdkent in #95
• [TST] add tests by @nicoalee in #97
• [FIX] public/private distinction by @jdkent in #96
• [MAINT] update spec by @jdkent in #103
• [MAINT] upgrade react materials to MUI V5 by @nicoalee in #105
• [ENH] add pagination by @nicoalee in #106
• [ENH] run frontend by @jdkent in #108
• [ENH] basic search filtering by @nicoalee in #109
• [ENH] edit enhancements by @nicoalee in #114
• [MNT] update staging by @jdkent in #115
• [FIX] add try_file in nginx by @jdkent in #118
• [TST] add frontend tests by @jdkent in #116
• [MAINT] updated gitignore with postgres py migration files and added e… by @nicoalee in #120
• [DOC] added build steps for dev and staging and updated readme by @nicoalee in #123
• [FIX] code review improvements by @nicoalee in #125
• [ENH] datasets & annotations by @jdkent in #126
• [REF] docker compose init procedure by @jdkent in #135
• [FIX] images add date by @jdkent in #137
• [REF] restructure code by @jdkent in #139
• [ENH] add analyses to study view by @nicoalee in #143
• [ENH] cloning a study will redirect to that study, log out bug fixed by @nicoalee in #150
• [FIX] map port 80 again by @jdkent in #153
• [ENH] study analyses editing by @nicoalee in #156
• [ENH] add delete operation to all endpoints by @jdkent in #165
• [ENH] implement datasets by @nicoalee in #174
• [FIX] add health command for postgres by @jdkent in #177
• [MAINT] update spec by @jdkent in #179
• [ENH] add export option to annotations by @jdkent in #181
• [MAINT] annotations/tests by @jdkent in #188
• [MAINT] change openapi branch to main by @jdkent in #189
• [MAINT] installation by @jdkent in #190
• [ENH] study year by @jdkent in #192
• [FIX] userview by @jdkent in #199
• [MAINT] add ipython to command flask shell by @jdkent in #200
• [FIX] public private by @jdkent in #201
• [ENH] Coordinate/Image search by @jdkent in #202
• [FIX] update annotations when adding study to dataset by @jdkent in #208
• [ENH] annotation key by @jdkent in #212
• [FEAT] Add Annotations Page by @jdkent in #193
• [ENH] add neurosynth2 by @jdkent in #218
• [FIX] maint by @jdkent in #222
• [FIX] spec conformance by @jdkent in #223
• [FIX] initialize annotation with empty notes by @jdkent in #224
• [ENH] added appzi feedback widget by @nicoalee in #229
• [REF] moved neurosynth-frontend to synth folder by @nicoalee in #230
• [FIX] removed notes property from payload by @nicoalee in #233
• [ENH] 234 add owner column to annotations by @nicoalee in #240
• [TST] point test by @jdkent in #246
• [ENH] make nested queries faster by @jdkent in #239
• [ENH] convert datasets to studysets by @jdkent in #242
• [FIX] missing change from dataset to studyset by @jdkent in #250
• [MAINT] update openapi spec by @jdkent in #251
• [Fix] entity by @jdkent in #256
• [FIX] change kwargs to metadata in schemas by @jdkent in #257
• [ENH] study editor: add/remove/update conditions by @jdkent in #244
• [REF] 258 integrate sdk into frontend and cicd pipeline by @nicoalee in #260
• [ENH] update spec by @jdkent in #272
• [ENH] ingest neurostore data by @jdkent in #273
• [FIX] neurosynth endpoint by @jdkent in #274
• [TST] schemathesis robustness by @jdkent in #276
• [FIX] add missing fields specification schema by @jdkent in #278
• [DOC] include documentation for the neurosynth spec by @jdkent in #282
• [ENH] add frontend config by @jdkent in #249
• [REF] Split nimads by @jdkent in #287
• [ENH] 113 edit enhancements involving addremoveupdate points by @nicoalee in #290
• [FIX] Remove unused function by @jdkent in #289
• [REF] prepare compose.neurosynth.org by @jdkent in #294
• [ENH] 292 rework landing page and improve performance by @nicoalee in #297
• [FIX] fix: resolved bug with ids set to same id by @nicoalee in #302
• [FIX] nginx GZIP javascript content by @jdkent in #301
• [ENH] 292 rework landing page and improve performance by @nicoalee in #303
• [DOCS] Mkdoc/neurosynth by @jdkent in #304
• [ENH] 292 rework landing page and improve performance by @nicoalee in #306
• [FIX] add explicit indices and remove subquery load from analysis-conditions by @jdkent in #324
• [ENH] feat: added add button to studypage and refactored code to move study set add/update logic to studysetpopupmenu component by @nicoalee in #336
• [ENH] create tour by @jdkent in #334
• [ENH] feat: made logo clickable by @nicoalee in #337
• [FIX] 312 handle situation when authenticated user tries to update studies studysets meta analyses that are not theirs by @nicoalee in #338
• [FIX] feat: allowed viewport to shrink more without turning into hamburger menu, moved drawer to right side by @nicoalee in #339
• [ENH] 309 add ability to delete study from studyset by @nicoalee in #340
• [ENH] feat: added studies link for empty studysets by @nicoalee in #342
• [ENH] feat: not found page implemented by @nicoalee in #344
• [ENH] 310 create protected routes for edit pages by @nicoalee in #346
• [ENH] 329 add warning are you sure prompt if the user tries to clone a cloned study by @nicoalee in #347
• [REF] use nimads repo by @jdkent in #348
• [ENH] 231 search improvements by @nicoalee in #349
• [ENH] add release drafter action and template by @jdkent in #354

New Contributors

• @adelavega made their first contribution in #3
• @tyarkoni made their first contribution in #24
• @nicoalee made their first contribution in #88

Full Changelog: https://github.com/neurostuff/neurostore/commits/v0.1