pondie/pyproject.toml at main · neurostuff/pondie · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
[build-system]
requires = ["setuptools>=68", "wheel"]
build-backend = "setuptools.build_meta"

[project]
name = "information-extraction"
version = "0.1.0"
description = "Neuroimaging article information extraction pipeline"
readme = "README.md"
requires-python = ">=3.10"
dependencies = [
  "beautifulsoup4>=4.12",
  "python-dotenv>=1.0",
  "lxml>=5.1",
  "langextract",
  "num2words>=0.5.13",
  "tenacity>=8.2",
]

[project.optional-dependencies]
dev = [
  "pytest>=8.0",
]
abbrev = [
  "scispacy>=0.5.4",
  "spacy>=3.7",
]
openai = [
  "openai>=1.40.0",
]
semantic = [
  "sentence-transformers>=3.0",
  "transformers>=4.40.0",
  "torch>=2.1",
]
docling = [
  "docling>=0.1.0",
]

[project.scripts]
pondie = "information_extraction.cli:main"

[tool.setuptools.packages.find]
where = ["."]
include = ["information_extraction*"]

[tool.pytest.ini_options]
testpaths = ["tests"]