nf-ga4gh/build.gradle at main · nextflow-io/nf-ga4gh · GitHub

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plugins {
    id 'io.nextflow.nextflow-plugin' version '1.0.0-beta.14'
}

dependencies {
    // required by the auto-generated TES Java SDK
    api "com.google.code.gson:gson:2.11.0"
    api "com.squareup.okhttp:logging-interceptor:2.7.5"
    api "com.squareup.okhttp:okhttp:2.7.5"
    api "io.gsonfire:gson-fire:1.8.3"
    api "io.swagger.core.v3:swagger-annotations:2.0.0"
    api "javax.annotation:javax.annotation-api:1.3.2"
    api "org.threeten:threetenbp:1.3.5"

    // Unit tests: WireMock for in-process HTTP stubs
    testImplementation "org.wiremock:wiremock:3.13.1"
}

version = project.file('VERSION').text.trim()

test {
    testLogging {
        events 'passed', 'skipped', 'failed'
    }
}

// -----------------------------------------------------------------------
// integrationTest — exercises the DRS plugin against real, running Syfon
// and MinIO services (see .github/workflows/drs.yml). Unlike `test`
// (WireMock-stubbed), this suite is skipped unless SYFON_BASE_URL is set,
// so it never runs as part of a plain `./gradlew test` or `./gradlew build`.
// -----------------------------------------------------------------------
sourceSets {
    integrationTest {
        groovy.srcDirs = ['src/integrationTest/groovy']
        resources.srcDirs = ['src/integrationTest/resources']
        compileClasspath += sourceSets.main.output + sourceSets.test.output
        runtimeClasspath += sourceSets.main.output + sourceSets.test.output
    }
}

configurations {
    integrationTestImplementation.extendsFrom testImplementation
    integrationTestRuntimeOnly.extendsFrom testRuntimeOnly
}

tasks.register('integrationTest', Test) {
    description = 'Runs DRS integration tests against live Syfon + MinIO services.'
    group = 'verification'
    useJUnitPlatform()
    testClassesDirs = sourceSets.integrationTest.output.classesDirs
    classpath = sourceSets.integrationTest.runtimeClasspath
    testLogging {
        events 'passed', 'skipped', 'failed'
    }
    shouldRunAfter test
}

nextflowPlugin {
    nextflowVersion = '25.10.0'

    provider = 'nextflow'
    className = 'nextflow.ga4gh.Ga4ghPlugin'
    extensionPoints = [
        'nextflow.ga4gh.drs.DrsPathFactory',
        'nextflow.ga4gh.drs.DrsPathRegistrant',
        'nextflow.ga4gh.tes.config.TesConfig',
        'nextflow.ga4gh.tes.executor.TesExecutor',
    ]
}