add 2e2 test to read remote files (#21)

Signed-off-by: Jorge Aguilera <jorge@edn.es>

Author: jagedn

src/e2e/tests/count.nf.test

@@ -12,4 +12,18 @@ nextflow_pipeline {
 
     }
 
+    test("Should count an http file") {
+
+        when{
+            params{
+                url = 'https://github.com/supandatavizz/yellow-trip-parquet/raw/refs/heads/main/yellow_tripdata_2023-01.parquet'
+            }
+        }
+        then {
+            assert workflow.success
+            assert workflow.stdout[0] as int == 3066766
+        }
+
+    }
+
 }

src/e2e/workflows/count.nf

@@ -1,5 +1,7 @@
 include { countParquet } from 'plugin/nf-parquet'
 
-channel.fromPath("${baseDir}/data/presidents.parquet")
+url = params.url ?: "${baseDir}/data/presidents.parquet"
+
+channel.fromPath(url)
         .countParquet( )
         | view