updates to v0.3.0

Author: Jon Palmer

util/getEggNog.sh

@@ -0,0 +1,21 @@
+#!/bin/bash
+
+if [ -z "$1" ]; then
+    echo "Usage: getEggNog.sh fuNOG directory"
+    exit
+fi
+
+
+EGGNOG=$1
+wget -c --tries=0 --read-timeout=20 http://eggnogdb.embl.de/download/eggnog_4.5/data/$EGGNOG/$EGGNOG.hmm.tar.gz
+wget -c --tries=0 --read-timeout=20 http://eggnogdb.embl.de/download/eggnog_4.5/data/$EGGNOG/$EGGNOG.annotations.tsv.gz
+gunzip $EGGNOG.annotations.tsv.gz
+tar -zxf $EGGNOG.hmm.tar.gz
+find $EGGNOG\_hmm/ -maxdepth 1 -type f -name '*.hmm' -exec cat '{}' \; > $EGGNOG\_4.5.hmm
+hmmpress $EGGNOG\_4.5.hmm
+rm $EGGNOG.hmm.tar.gz
+rm -R $EGGNOG\_hmm/
+for i in $EGGNOG\*; do
+    mv $i $2/
+done
+echo "Done, $EGGNOG DB is now ready to use"