fix variable name bug i introduced in v0.3.13

Author: Jon Palmer

bin/funannotate-functional.py

@@ -346,6 +346,8 @@ def runIPRpython(Input):
                 lib.update_progress(pct)
                 time.sleep(10)
             num_files = len(glob.glob1(IPROUT,"*.xml"))
+        #clean up protein fasta files
+        shutil.rmtree(PROTS)
     else:
         if os.path.isdir(args.iprscan):
             IPROUT = args.iprscan
@@ -371,9 +373,7 @@ def runIPRpython(Input):
         OBO = os.path.join(parentdir, 'DB', 'go.obo')
         with open(GO_terms, 'w') as output:
             subprocess.call([sys.executable, IPR2GO, OBO, IPROUT], stdout = output, stderr = FNULL)
-    #clean up input
-    if PROTS:
-        shutil.rmtree(PROTS)
+        
 
 #check if antiSMASH data is given, if so parse and reformat for annotations and cluster textual output
 if args.antismash:

funannotate.py

@@ -31,7 +31,7 @@ def fmtcols(mylist, cols):
              for i in range(0,num_lines))
     return "\n".join(lines)
 
-version = '0.3.13'
+version = '0.3.14'
 
 default_help = """
 Usage:       funannotate <command> <arguments>

lib/library.py

@@ -55,6 +55,14 @@ class colr:
     GRN = '\033[92m'
     END = '\033[0m'
     WARN = '\033[93m'
+    
+def SafeRemove(input):
+    if os.path.isdir(input):
+        shutil.rmtree(input)
+    elif os.path.isfile(input):
+        os.remove(input)
+    else:
+        return
 
 def runSubprocess(cmd, dir, logfile):
     logfile.debug(' '.join(cmd))