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Jon PalmerJon Palmer
Jon Palmer
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Jon Palmer
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fix bug in transcript/protein final output
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bin/funannotate-predict.py

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@@ -1000,7 +1000,7 @@ def __init__(self, prog):
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final_gbk = os.path.join(args.out, 'predict_results', base + '.gbk')
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final_tbl = os.path.join(args.out, 'predict_results', base + '.tbl')
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final_proteins = os.path.join(args.out, 'predict_results', base + '.proteins.fa')
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final_transcripts = os.path.join(args.out, 'predict_results', base + '.proteins.fa')
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final_transcripts = os.path.join(args.out, 'predict_results', base + '.transcripts.fa')
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#run tbl2asn in new directory directory
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shutil.copyfile(os.path.join('tbl2asn', 'genome.fasta'), os.path.join('tbl2asn', 'genome.fsa'))
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discrep = os.path.join(args.out, 'predict_results', base + '.discrepency.report.txt')

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