This repository contains three workflows for the analysis of West Nile virus data:
ingest/- Download data from GenBank, clean and curate itphylogenetic/- Workflow which produces JSONs for visualisation in Auspicenextclade/- Create nextclade datasets
Each folder contains a README.md with more information. The results of running both workflows are publicly visible at nextstrain.org/WNV.
Follow the standard installation instructions for Nextstrain's suite of software tools.