From 84022b5624a1415f449e6486f5ac6c06b971934d Mon Sep 17 00:00:00 2001 From: Victor Lin <13424970+victorlin@users.noreply.github.com> Date: Mon, 17 Mar 2025 16:52:21 -0700 Subject: [PATCH] =?UTF-8?q?=F0=9F=9A=A7=20ingest=5Fandersen=5Flab:=20Set?= =?UTF-8?q?=20`date=5Freleased`=20as=20upper=20bound=20of=20`date`?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- ingest/build-configs/ncbi/rules/ingest_andersen_lab.smk | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/ingest/build-configs/ncbi/rules/ingest_andersen_lab.smk b/ingest/build-configs/ncbi/rules/ingest_andersen_lab.smk index 2d31d35..d834673 100644 --- a/ingest/build-configs/ncbi/rules/ingest_andersen_lab.smk +++ b/ingest/build-configs/ncbi/rules/ingest_andersen_lab.smk @@ -124,6 +124,8 @@ rule curate_metadata: params: host_map=config["curate"]["host_map"], date_fields=['date', 'date_released'], + target_date_field='date', + target_date_field_max='date_released', expected_date_formats=['%Y-%m-%d', '%Y', '%Y-%m-%d %H:%M:%S', '%Y-%m-%dT%H:%M:%SZ'], annotations_id=config["curate"]["annotations_id"], shell: @@ -136,6 +138,8 @@ rule curate_metadata: | augur curate format-dates \ --date-fields {params.date_fields:q} \ --expected-date-formats {params.expected_date_formats:q} \ + --target-date-field {params.target_date_field:q} \ + --target-date-field-max {params.target_date_field_max:q} \ | ./build-configs/ncbi/bin/transform-host \ --host-map {params.host_map} \ | ./vendored/apply-geolocation-rules \