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.github/ingest-to-phylo: add ebov prefix to cache check
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.github/workflows/ingest-to-phylogenetic.yaml

Lines changed: 5 additions & 5 deletions
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@@ -41,22 +41,22 @@ jobs:
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permissions:
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id-token: write
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uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@master
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secrets: inherit
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secrets: inherit
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with:
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runtime: docker
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env: |
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NEXTSTRAIN_DOCKER_IMAGE: ${{ inputs.image }}
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run: |
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nextstrain build ingest \
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upload_all \
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--configfile build-configs/nextstrain-automation/config.yaml
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--configfile build-configs/nextstrain-automation/config.yaml
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# Specifying artifact name to differentiate ingest build outputs from the phylogenetic build outputs
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artifact-name: ingest-output
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artifact-paths: |
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ingest/benchmarks/
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ingest/logs/
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ingest/.snakemake/log/
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# Check if ingest results include new data by checking for the cache
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# of the file with the results' Metadata.sh256sum (which should have been added within upload-to-s3)
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AWS_DEFAULT_REGION: ${{ vars.AWS_DEFAULT_REGION }}
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run: |
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s3_urls=(
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"s3://nextstrain-data/files/workflows/ebola/metadata.tsv.zst"
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"s3://nextstrain-data/files/workflows/ebola/ebov/metadata.tsv.zst"
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)
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# Code below is modified from ingest/upload-to-s3
@@ -120,4 +120,4 @@ jobs:
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artifact-paths: |
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phylogenetic/benchmarks/
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phylogenetic/logs/
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phylogenetic/.snakemake/log/
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phylogenetic/.snakemake/log/

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