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Expand file tree Collapse file tree Original file line number Diff line number Diff line change @@ -41,22 +41,22 @@ jobs:
4141 permissions :
4242 id-token : write
4343 uses : nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@master
44- secrets : inherit
44+ secrets : inherit
4545 with :
4646 runtime : docker
4747 env : |
4848 NEXTSTRAIN_DOCKER_IMAGE: ${{ inputs.image }}
4949 run : |
5050 nextstrain build ingest \
5151 upload_all \
52- --configfile build-configs/nextstrain-automation/config.yaml
52+ --configfile build-configs/nextstrain-automation/config.yaml
5353 # Specifying artifact name to differentiate ingest build outputs from the phylogenetic build outputs
5454 artifact-name : ingest-output
5555 artifact-paths : |
5656 ingest/benchmarks/
5757 ingest/logs/
5858 ingest/.snakemake/log/
59-
59+
6060
6161 # Check if ingest results include new data by checking for the cache
6262 # of the file with the results' Metadata.sh256sum (which should have been added within upload-to-s3)
7474 AWS_DEFAULT_REGION : ${{ vars.AWS_DEFAULT_REGION }}
7575 run : |
7676 s3_urls=(
77- "s3://nextstrain-data/files/workflows/ebola/metadata.tsv.zst"
77+ "s3://nextstrain-data/files/workflows/ebola/ebov/ metadata.tsv.zst"
7878 )
7979
8080 # Code below is modified from ingest/upload-to-s3
@@ -120,4 +120,4 @@ jobs:
120120 artifact-paths : |
121121 phylogenetic/benchmarks/
122122 phylogenetic/logs/
123- phylogenetic/.snakemake/log/
123+ phylogenetic/.snakemake/log/
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