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Update tbprofiler and add DuckDB
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@@ -33,11 +33,18 @@ RUN conda create -y --name snippy \
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RUN conda create -y --name tb-profiler \
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-c conda-forge -c bioconda \
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sra-tools=3.2.1 \
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tb-profiler=6.6.3-0 \
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tb-profiler=6.6.5 \
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&& conda clean -afy \
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&& rm -rf ~/.cache \
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&& chmod -R a+rwXt /nextstrain/miniforge/envs/tb-profiler
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RUN conda create -y --name duckdb \
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-c conda-forge \
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duckdb-cli \
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&& conda clean -afy \
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&& rm -rf ~/.cache \
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&& chmod -R a+rwXt /nextstrain/miniforge/envs/duckdb
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# Switch back to root. The entrypoint will drop to nextstrain:nextstrain as
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# necessary when a container starts.
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USER root

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