Classify samples by drug-specific resistance with tbp-parser

[kimandrews]

We could use the program tbp-parser to obtain sample-specific drug resistance info for 14 drugs and include that as a color-by on the tree.

One of the tbp-parser output files is called {sample}.looker_report.csv. Here is an example screenshot for sample SRR32138095:

Resistance is reported as: resistant (R), uncertain (U), or susceptible (S)

Required inputs for tbp-parser for each sample are:

• JSON file produced by TBProfiler
• BAM and BAI file produced by TBProfiler

This analysis would require adding tbp-parser to the Docker image.