update singularity docker images

Vivian0105 · Vivian0105 · commit 86e897161399 · 2026-03-05T10:19:09.000-05:00
diff --git a/modules/local/changeo/changeo_assigngenes.nf b/modules/local/changeo/changeo_assigngenes.nf
@@ -5,7 +5,7 @@ process CHANGEO_ASSIGNGENES {
 
     conda "bioconda::changeo=1.3.4 bioconda::igblast=1.22.0 conda-forge::wget=1.25.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'oras://community.wave.seqera.io/library/changeo_igblast_wget:dcfe290eb28df215' :
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/96/9632e731611070a8bc090d51443514959a3179ad6a32be77f0dea1b64f0c12c5/data' :
         'community.wave.seqera.io/library/changeo_igblast_wget:192e77f3b68daa50' }"
 
     input:
diff --git a/modules/local/changeo/changeo_convertdb_fasta.nf b/modules/local/changeo/changeo_convertdb_fasta.nf
@@ -6,7 +6,7 @@ process CHANGEO_CONVERTDB_FASTA {
 
     conda "bioconda::changeo=1.3.4 bioconda::igblast=1.22.0 conda-forge::wget=1.25.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'oras://community.wave.seqera.io/library/changeo_igblast_wget:dcfe290eb28df215' :
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/96/9632e731611070a8bc090d51443514959a3179ad6a32be77f0dea1b64f0c12c5/data' :
         'community.wave.seqera.io/library/changeo_igblast_wget:192e77f3b68daa50' }"
 
     input:
diff --git a/modules/local/changeo/changeo_creategermlines.nf b/modules/local/changeo/changeo_creategermlines.nf
@@ -6,7 +6,7 @@ process CHANGEO_CREATEGERMLINES {
 
     conda "bioconda::changeo=1.3.4 bioconda::igblast=1.22.0 conda-forge::wget=1.25.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'oras://community.wave.seqera.io/library/changeo_igblast_wget:dcfe290eb28df215' :
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/96/9632e731611070a8bc090d51443514959a3179ad6a32be77f0dea1b64f0c12c5/data' :
         'community.wave.seqera.io/library/changeo_igblast_wget:192e77f3b68daa50' }"
 
     input:
diff --git a/modules/local/changeo/changeo_makedb.nf b/modules/local/changeo/changeo_makedb.nf
@@ -6,7 +6,7 @@ process CHANGEO_MAKEDB {
 
     conda "bioconda::changeo=1.3.4 bioconda::igblast=1.22.0 conda-forge::wget=1.25.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'oras://community.wave.seqera.io/library/changeo_igblast_wget:dcfe290eb28df215' :
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/96/9632e731611070a8bc090d51443514959a3179ad6a32be77f0dea1b64f0c12c5/data' :
         'community.wave.seqera.io/library/changeo_igblast_wget:192e77f3b68daa50' }"
 
     input:
diff --git a/modules/local/changeo/changeo_parsedb_select_locus.nf b/modules/local/changeo/changeo_parsedb_select_locus.nf
@@ -6,7 +6,7 @@ process CHANGEO_PARSEDB_SELECT_LOCUS {
 
     conda "bioconda::changeo=1.3.4 bioconda::igblast=1.22.0 conda-forge::wget=1.25.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'oras://community.wave.seqera.io/library/changeo_igblast_wget:dcfe290eb28df215' :
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/96/9632e731611070a8bc090d51443514959a3179ad6a32be77f0dea1b64f0c12c5/data' :
         'community.wave.seqera.io/library/changeo_igblast_wget:192e77f3b68daa50' }"
 
     input:
diff --git a/modules/local/changeo/changeo_parsedb_split.nf b/modules/local/changeo/changeo_parsedb_split.nf
@@ -6,7 +6,7 @@ process CHANGEO_PARSEDB_SPLIT {
 
     conda "bioconda::changeo=1.3.4 bioconda::igblast=1.22.0 conda-forge::wget=1.25.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'oras://community.wave.seqera.io/library/changeo_igblast_wget:dcfe290eb28df215' :
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/96/9632e731611070a8bc090d51443514959a3179ad6a32be77f0dea1b64f0c12c5/data' :
         'community.wave.seqera.io/library/changeo_igblast_wget:192e77f3b68daa50' }"
 
     input:
diff --git a/modules/local/fetch_databases.nf b/modules/local/fetch_databases.nf
@@ -5,7 +5,7 @@ process FETCH_DATABASES {
 
     conda "bioconda::changeo=1.3.4 bioconda::igblast=1.22.0 conda-forge::wget=1.25.0"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'oras://community.wave.seqera.io/library/changeo_igblast_wget:dcfe290eb28df215' :
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/96/9632e731611070a8bc090d51443514959a3179ad6a32be77f0dea1b64f0c12c5/data' :
         'community.wave.seqera.io/library/changeo_igblast_wget:192e77f3b68daa50' }"
 
     output:
diff --git a/modules/local/presto/presto_assemblepairs.nf b/modules/local/presto/presto_assemblepairs.nf
@@ -5,7 +5,7 @@ process PRESTO_ASSEMBLEPAIRS {
 
     conda "bioconda::presto=0.7.7"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'oras://community.wave.seqera.io/library/pip_presto:0f8e73dc0555493d' :
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/c0/c01c6e6bcfd26b9a1a615e18f51a9bbdf8674ae1ab441e19f25d5481eba01248/data' :
         'biocontainers/presto:0.7.7--pyhdfd78af_0' }"
 
     input:
diff --git a/modules/local/presto/presto_assemblepairs_sequential.nf b/modules/local/presto/presto_assemblepairs_sequential.nf
@@ -3,10 +3,10 @@ process PRESTO_ASSEMBLEPAIRS_SEQUENTIAL {
     label 'process_long_parallelized'
     label 'immcantation'
 
-    conda "bioconda::presto=0.7.8 bioconda::igblast=1.22.0 conda-forge::wget=1.25.0 conda-forge::biopython=1.85"
+    conda "bioconda::presto=0.7.7 bioconda::igblast=1.22.0 conda-forge::wget=1.25.0 conda-forge::biopython=1.85"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'oras://community.wave.seqera.io/library/igblast_presto_biopython_wget:998420b05d633f8b':
-        'community.wave.seqera.io/library/igblast_presto_biopython_wget:f5b8b5bc422078ec' }"
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/83/836a337b2b32c949953b0cb3e225b6a353927c8d72520699e2a5a54bb2068c97/data://community.wave.seqera.io/library/igblast_presto_biopython_wget:998420b05d633f8b':
+        'community.wave.seqera.io/library/igblast_presto_biopython_wget:318e80ae37a48eb1' }"
 
     input:
     tuple val(meta), path(R1), path(R2) // reads in fastq format
diff --git a/modules/local/presto/presto_buildconsensus.nf b/modules/local/presto/presto_buildconsensus.nf
@@ -5,7 +5,7 @@ process PRESTO_BUILDCONSENSUS {
 
     conda "bioconda::presto=0.7.7"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'oras://community.wave.seqera.io/library/pip_presto:0f8e73dc0555493d' :
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/c0/c01c6e6bcfd26b9a1a615e18f51a9bbdf8674ae1ab441e19f25d5481eba01248/data' :
         'biocontainers/presto:0.7.7--pyhdfd78af_0' }"
 
     input:
diff --git a/modules/local/presto/presto_clustersets.nf b/modules/local/presto/presto_clustersets.nf
@@ -5,7 +5,7 @@ process PRESTO_CLUSTERSETS {
 
     conda "bioconda::presto=0.7.7"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'oras://community.wave.seqera.io/library/pip_presto:0f8e73dc0555493d' :
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/c0/c01c6e6bcfd26b9a1a615e18f51a9bbdf8674ae1ab441e19f25d5481eba01248/data' :
         'biocontainers/presto:0.7.7--pyhdfd78af_0' }"
 
     input:
diff --git a/modules/local/presto/presto_collapseseq.nf b/modules/local/presto/presto_collapseseq.nf
@@ -5,7 +5,7 @@ process PRESTO_COLLAPSESEQ {
 
     conda "bioconda::presto=0.7.7"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'oras://community.wave.seqera.io/library/pip_presto:0f8e73dc0555493d' :
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/c0/c01c6e6bcfd26b9a1a615e18f51a9bbdf8674ae1ab441e19f25d5481eba01248/data' :
         'biocontainers/presto:0.7.7--pyhdfd78af_0' }"
 
     input:
diff --git a/modules/local/presto/presto_filterseq.nf b/modules/local/presto/presto_filterseq.nf
@@ -5,7 +5,7 @@ process PRESTO_FILTERSEQ {
 
     conda "bioconda::presto=0.7.7"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'oras://community.wave.seqera.io/library/pip_presto:0f8e73dc0555493d' :
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/c0/c01c6e6bcfd26b9a1a615e18f51a9bbdf8674ae1ab441e19f25d5481eba01248/data' :
         'biocontainers/presto:0.7.7--pyhdfd78af_0' }"
 
     input:
diff --git a/modules/local/presto/presto_filterseq_postassembly.nf b/modules/local/presto/presto_filterseq_postassembly.nf
@@ -5,7 +5,7 @@ process PRESTO_FILTERSEQ_POSTASSEMBLY {
 
     conda "bioconda::presto=0.7.7"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'oras://community.wave.seqera.io/library/pip_presto:0f8e73dc0555493d' :
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/c0/c01c6e6bcfd26b9a1a615e18f51a9bbdf8674ae1ab441e19f25d5481eba01248/data' :
         'biocontainers/presto:0.7.7--pyhdfd78af_0' }"
 
     input:
diff --git a/modules/local/presto/presto_maskprimers.nf b/modules/local/presto/presto_maskprimers.nf
@@ -5,7 +5,7 @@ process PRESTO_MASKPRIMERS {
 
     conda "bioconda::presto=0.7.7"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'oras://community.wave.seqera.io/library/pip_presto:0f8e73dc0555493d' :
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/c0/c01c6e6bcfd26b9a1a615e18f51a9bbdf8674ae1ab441e19f25d5481eba01248/data' :
         'biocontainers/presto:0.7.7--pyhdfd78af_0' }"
 
     input:
diff --git a/modules/local/presto/presto_maskprimers_align.nf b/modules/local/presto/presto_maskprimers_align.nf
@@ -5,7 +5,7 @@ process PRESTO_MASKPRIMERS_ALIGN {
 
     conda "bioconda::presto=0.7.7"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'oras://community.wave.seqera.io/library/pip_presto:0f8e73dc0555493d' :
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/c0/c01c6e6bcfd26b9a1a615e18f51a9bbdf8674ae1ab441e19f25d5481eba01248/data' :
         'biocontainers/presto:0.7.7--pyhdfd78af_0' }"
 
     input:
diff --git a/modules/local/presto/presto_maskprimers_extract.nf b/modules/local/presto/presto_maskprimers_extract.nf
@@ -5,7 +5,7 @@ process PRESTO_MASKPRIMERS_EXTRACT {
 
     conda "bioconda::presto=0.7.7"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'oras://community.wave.seqera.io/library/pip_presto:0f8e73dc0555493d' :
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/c0/c01c6e6bcfd26b9a1a615e18f51a9bbdf8674ae1ab441e19f25d5481eba01248/data' :
         'biocontainers/presto:0.7.7--pyhdfd78af_0' }"
 
     input:
diff --git a/modules/local/presto/presto_maskprimers_postassembly.nf b/modules/local/presto/presto_maskprimers_postassembly.nf
@@ -5,7 +5,7 @@ process PRESTO_MASKPRIMERS_POSTASSEMBLY {
 
     conda "bioconda::presto=0.7.7"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'oras://community.wave.seqera.io/library/pip_presto:0f8e73dc0555493d' :
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/c0/c01c6e6bcfd26b9a1a615e18f51a9bbdf8674ae1ab441e19f25d5481eba01248/data' :
         'biocontainers/presto:0.7.7--pyhdfd78af_0' }"
 
     input:
diff --git a/modules/local/presto/presto_maskprimers_score.nf b/modules/local/presto/presto_maskprimers_score.nf
@@ -5,7 +5,7 @@ process PRESTO_MASKPRIMERS_SCORE {
 
     conda "bioconda::presto=0.7.7"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'oras://community.wave.seqera.io/library/pip_presto:0f8e73dc0555493d' :
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/c0/c01c6e6bcfd26b9a1a615e18f51a9bbdf8674ae1ab441e19f25d5481eba01248/data' :
         'biocontainers/presto:0.7.7--pyhdfd78af_0' }"
 
     input:
diff --git a/modules/local/presto/presto_pairseq.nf b/modules/local/presto/presto_pairseq.nf
@@ -5,7 +5,7 @@ process PRESTO_PAIRSEQ {
 
     conda "bioconda::presto=0.7.7"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'oras://community.wave.seqera.io/library/pip_presto:0f8e73dc0555493d' :
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/c0/c01c6e6bcfd26b9a1a615e18f51a9bbdf8674ae1ab441e19f25d5481eba01248/data' :
         'biocontainers/presto:0.7.7--pyhdfd78af_0' }"
 
     input:
diff --git a/modules/local/presto/presto_parse_cluster.nf b/modules/local/presto/presto_parse_cluster.nf
@@ -5,7 +5,7 @@ process PRESTO_PARSE_CLUSTER {
 
     conda "bioconda::presto=0.7.7"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'oras://community.wave.seqera.io/library/pip_presto:0f8e73dc0555493d' :
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/c0/c01c6e6bcfd26b9a1a615e18f51a9bbdf8674ae1ab441e19f25d5481eba01248/data' :
         'biocontainers/presto:0.7.7--pyhdfd78af_0' }"
 
     input:
diff --git a/modules/local/presto/presto_parseheaders.nf b/modules/local/presto/presto_parseheaders.nf
@@ -5,7 +5,7 @@ process PRESTO_PARSEHEADERS {
 
     conda "bioconda::presto=0.7.7"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'oras://community.wave.seqera.io/library/pip_presto:0f8e73dc0555493d' :
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/c0/c01c6e6bcfd26b9a1a615e18f51a9bbdf8674ae1ab441e19f25d5481eba01248/data' :
         'biocontainers/presto:0.7.7--pyhdfd78af_0' }"
 
     input:
diff --git a/modules/local/presto/presto_parseheaders_metadata.nf b/modules/local/presto/presto_parseheaders_metadata.nf
@@ -5,7 +5,7 @@ process PRESTO_PARSEHEADERS_METADATA {
 
     conda "bioconda::presto=0.7.7"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'oras://community.wave.seqera.io/library/pip_presto:0f8e73dc0555493d' :
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/c0/c01c6e6bcfd26b9a1a615e18f51a9bbdf8674ae1ab441e19f25d5481eba01248/data' :
         'biocontainers/presto:0.7.7--pyhdfd78af_0' }"
 
     input:
diff --git a/modules/local/presto/presto_parseheaders_primers.nf b/modules/local/presto/presto_parseheaders_primers.nf
@@ -5,7 +5,7 @@ process PRESTO_PARSEHEADERS_PRIMERS {
 
     conda "bioconda::presto=0.7.7"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'oras://community.wave.seqera.io/library/pip_presto:0f8e73dc0555493d' :
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/c0/c01c6e6bcfd26b9a1a615e18f51a9bbdf8674ae1ab441e19f25d5481eba01248/data' :
         'biocontainers/presto:0.7.7--pyhdfd78af_0' }"
 
     input:
diff --git a/modules/local/presto/presto_postconsensus_pairseq.nf b/modules/local/presto/presto_postconsensus_pairseq.nf
@@ -5,7 +5,7 @@ process PRESTO_POSTCONSENSUS_PAIRSEQ {
 
     conda "bioconda::presto=0.7.7"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'oras://community.wave.seqera.io/library/pip_presto:0f8e73dc0555493d' :
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/c0/c01c6e6bcfd26b9a1a615e18f51a9bbdf8674ae1ab441e19f25d5481eba01248/data' :
         'biocontainers/presto:0.7.7--pyhdfd78af_0' }"
 
     input:
diff --git a/modules/local/presto/presto_splitseq.nf b/modules/local/presto/presto_splitseq.nf
@@ -5,7 +5,7 @@ process PRESTO_SPLITSEQ {
 
     conda "bioconda::presto=0.7.7"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'oras://community.wave.seqera.io/library/pip_presto:0f8e73dc0555493d' :
+        'https://community-cr-prod.seqera.io/docker/registry/v2/blobs/sha256/c0/c01c6e6bcfd26b9a1a615e18f51a9bbdf8674ae1ab441e19f25d5481eba01248/data' :
         'biocontainers/presto:0.7.7--pyhdfd78af_0' }"
 
     input:
