Description of feature
I would like to create PON for cnvkit and I noticed that the pipeline currently does not use the cnvkit batch's --annotate option that is used to locate genes in output files. Could you please add it? Without it, when I later create some plots, there are no annotations.
https://cnvkit.readthedocs.io/en/stable/pipeline.html?highlight=annotate#labeling-target-regions
Description of feature
I would like to create PON for cnvkit and I noticed that the pipeline currently does not use the cnvkit batch's --annotate option that is used to locate genes in output files. Could you please add it? Without it, when I later create some plots, there are no annotations.
https://cnvkit.readthedocs.io/en/stable/pipeline.html?highlight=annotate#labeling-target-regions