Issues running MultiQC: illegal argument

[mirG123]

Description of the bug

Hi there!

I'm trying to run the demo pipeline to test out my install, but am continuously running into issues with the multiQC step.
So matter how I run the pipeline (I've tried using singularity and apptainer, running with and without the -r dev option), it gives me the same error output listed below.

As I mentioned, I tried using the -r dev option to make sure that I was using the most recent version of multiQC, and I've made sure that my nextflow version is up to date as well.

This container seems to cause issues in other pipelines as well, so any help would be appreciated!

Command used and terminal output

(nextflow_25.10.2) greenm11@alpsr4:~/nf-core-demo$ nextflow run nf-core/demo -profile test,singularity --outdir demo-results -r dev

executor >  local (8)
[d7/9fbc94] NFCORE_DEMO:DEMO:FASTQC (SAMPLE1_PE)     [100%] 3 of 3 ✔
[25/4fe083] NFCORE_DEMO:DEMO:SEQTK_TRIM (SAMPLE1_PE) [100%] 3 of 3 ✔
[5f/a08ef4] NFCORE_DEMO:DEMO:MULTIQC                 [  0%] 0 of 1, retries: 1
[93/417670] NOTE: Process `NFCORE_DEMO:DEMO:MULTIQC` terminated with an error exit status (132) -- Execution is retried (1)
ERROR ~ Error executing process > 'NFCORE_DEMO:DEMO:MULTIQC'

Caused by:
executor >  local (8)
[d7/9fbc94] NFCORE_DEMO:DEMO:FASTQC (SAMPLE1_PE)     [100%] 3 of 3 ✔
[25/4fe083] NFCORE_DEMO:DEMO:SEQTK_TRIM (SAMPLE1_PE) [100%] 3 of 3 ✔
[5f/a08ef4] NFCORE_DEMO:DEMO:MULTIQC                 [  0%] 0 of 1, retries: 1 ✘
-[nf-core/demo] Pipeline completed with errors-
[93/417670] NOTE: Process `NFCORE_DEMO:DEMO:MULTIQC` terminated with an error exit status (132) -- Execution is retried (1)
ERROR ~ Error executing process > 'NFCORE_DEMO:DEMO:MULTIQC'

Caused by:
  Process `NFCORE_DEMO:DEMO:MULTIQC` terminated with an error exit status (132)


Command executed:

  multiqc \
      --force \
       \
      --config multiqc_config.yml \
       \
       \
       \
       \
       \
      .

  cat <<-END_VERSIONS > versions.yml
  "NFCORE_DEMO:DEMO:MULTIQC":
      multiqc: $( multiqc --version | sed -e "s/multiqc, version //g" )
  END_VERSIONS

Command exit status:
  132

Command output:
  (empty)

Command error:
  INFO:    Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred
  INFO:    Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred
  INFO:    squashfuse not found, will not be able to mount SIF or other squashfs files
  INFO:    fuse2fs not found, will not be able to mount EXT3 filesystems
  INFO:    gocryptfs not found, will not be able to use gocryptfs
  INFO:    Converting SIF file to temporary sandbox...
  .command.sh: line 11:    41 Illegal instruction     (core dumped) multiqc --force --config multiqc_config.yml .
  INFO:    Cleaning up image...

Relevant files

No response

System information

Linux alpsr4 5.4.0-91-generic #102-Ubuntu SMP Fri Nov 5 16:31:28 UTC 2021 x86_64 GNU/Linux