remove DE params

antoniasaracco · antoniasaracco · commit 61dba4e45679 · 2026-05-08T19:19:19.000Z
diff --git a/conf/profile/generic_matrix/generic_matrix_dream.config b/conf/profile/generic_matrix/generic_matrix_dream.config
@@ -18,7 +18,4 @@ params {
 
     // Differential output columns
     differential_file_suffix = '.dream.results.tsv'
-    differential_fc_column = 'logFC'
-    differential_pval_column = 'P.Value'
-    differential_qval_column = 'adj.P.Val'
 }
diff --git a/conf/profile/maxquant/maxquant.config b/conf/profile/maxquant/maxquant.config
@@ -32,9 +32,6 @@ params {
 
     // Differential output columns
     differential_file_suffix         = '.limma.results.tsv'
-    differential_fc_column           = 'logFC'
-    differential_pval_column         = 'P.Value'
-    differential_qval_column         = 'adj.P.Val'
 
     // Proteus
     proteus_measurecol_prefix        = 'LFQ intensity'
diff --git a/conf/profile/rnaseq/rnaseq_dream.config b/conf/profile/rnaseq/rnaseq_dream.config
@@ -23,7 +23,4 @@ params {
 
     // Differential output columns
     differential_file_suffix = '.dream.results.tsv'
-    differential_fc_column   = 'logFC'
-    differential_pval_column = 'P.Value'
-    differential_qval_column = 'adj.P.Val'
 }
diff --git a/conf/profile/rnaseq/rnaseq_limma.config b/conf/profile/rnaseq/rnaseq_limma.config
@@ -23,7 +23,4 @@ params {
 
     // Differential output columns
     differential_file_suffix = '.limma.results.tsv'
-    differential_fc_column   = 'logFC'
-    differential_pval_column = 'P.Value'
-    differential_qval_column = 'adj.P.Val'
 }
diff --git a/conf/profile/soft/soft.config b/conf/profile/soft/soft.config
@@ -35,7 +35,4 @@ params {
 
     // Differential output columns
     differential_file_suffix         = '.limma.results.tsv'
-    differential_fc_column           = 'logFC'
-    differential_pval_column         = 'P.Value'
-    differential_qval_column         = 'adj.P.Val'
 }

Original file line number	Diff line number	Diff line change
`@@ -18,7 +18,4 @@ params {`
`18`	`18`
`19`	`19`	`// Differential output columns`
`20`	`20`	`differential_file_suffix = '.dream.results.tsv'`
`21`		`- differential_fc_column = 'logFC'`
`22`		`- differential_pval_column = 'P.Value'`
`23`		`- differential_qval_column = 'adj.P.Val'`
`24`	`21`	`}`
Original file line number	Diff line number	Diff line change
`@@ -23,7 +23,4 @@ params {`
`23`	`23`
`24`	`24`	`// Differential output columns`
`25`	`25`	`differential_file_suffix = '.dream.results.tsv'`
`26`		`- differential_fc_column = 'logFC'`
`27`		`- differential_pval_column = 'P.Value'`
`28`		`- differential_qval_column = 'adj.P.Val'`
`29`	`26`	`}`
Original file line number	Diff line number	Diff line change
`@@ -35,7 +35,4 @@ params {`
`35`	`35`
`36`	`36`	`// Differential output columns`
`37`	`37`	`differential_file_suffix = '.limma.results.tsv'`
`38`		`- differential_fc_column = 'logFC'`
`39`		`- differential_pval_column = 'P.Value'`
`40`		`- differential_qval_column = 'adj.P.Val'`
`41`	`38`	`}`