Add stubs to local modules #9

	name: run nextflow test configs
	# This workflow runs the pipeline with the minimal test dataset to check that it completes without any syntax errors
	on:
	push:
	branches:
	- dev
	pull_request:
	release:
	types: [published]
	workflow_dispatch:

	jobs:
	test:
	name: "Run all test configs"
	# Only run on push if this is the nf-core dev branch (merged PRs)
	if: "${{ github.event_name != 'push' \|\| (github.event_name == 'push' && github.repository == 'nf-core/dualrnaseq') }}"
	runs-on: ubuntu-latest
	steps:
	- name: Check out pipeline code
	uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4
	with:
	fetch-depth: 0

	- name: Set up Nextflow
	uses: nf-core/setup-nextflow@v2
	with:
	version: "${{ matrix.NXF_VER }}"

	- name: Clean up Disk space
	uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1

	- name: "Run test"
	run: \|
	nextflow run ${GITHUB_WORKSPACE} -profile docker,test --outdir ./results

	- name: "Run Salmon AB test"
	run: \|
	nextflow run ${GITHUB_WORKSPACE} -profile docker,test_ab --outdir ./results

	- name: "Run Salmon SA test"
	run: \|
	nextflow run ${GITHUB_WORKSPACE} -profile docker,test_sa --outdir ./results

	- name: "Run star/htseq test"
	run: \|
	nextflow run ${GITHUB_WORKSPACE} -profile docker,test_star_htseq --outdir ./results

	- name: "Run all test"
	run: \|
	nextflow run ${GITHUB_WORKSPACE} -profile docker,test_all --outdir ./results

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