cloudtest.yml

name: nf-core cloud tests (both full size and smaller)
# This workflow is triggered on PRs opened against the main/master branch.
# It can be additionally triggered manually with GitHub actions workflow dispatch button.
# It runs the -profile 'test_full' on cloud
# or the -profile 'test' on cloud (smaller tests)

on:
  workflow_dispatch:
    inputs:
      test:
        description: "-profile test (smaller)"
        type: boolean
        default: true
      aws:
        description: "AWS Batch"
        type: boolean
        default: true
      azure:
        description: "Azure Batch"
        type: boolean
        default: true
      gcp:
        description: "GCP Batch"
        type: boolean
        default: true
  pull_request_review:
    types: [submitted]
  release:
    types: [published]

jobs:
  run-platform:
    strategy:
      fail-fast: false
      matrix:
        include:
          - profile: test_aws
            test: test
            cloud: aws
            compute_env: TOWER_COMPUTE_ENV
            workdir: TOWER_BUCKET_AWS
          - profile: test_azure
            test: test
            cloud: azure
            compute_env: TOWER_CE_AZURE_CPU
            workdir: TOWER_BUCKET_AZURE
          - profile: test_gcp
            test: test
            cloud: gcp
            compute_env: TOWER_CE_GCP_CPU
            workdir: TOWER_BUCKET_GCP
          - profile: test_full_aws
            test: test_full
            cloud: aws
            compute_env: TOWER_COMPUTE_ENV
            workdir: TOWER_BUCKET_AWS
          - profile: test_full_azure
            test: test_full
            cloud: azure
            compute_env: TOWER_CE_AZURE_CPU
            workdir: TOWER_BUCKET_AZURE
          - profile: test_full_gcp
            test: test_full
            cloud: gcp
            compute_env: TOWER_CE_GCP_CPU
            workdir: TOWER_BUCKET_GCP
    name: Run cloud tests
    # run only if the PR is approved by at least 2 reviewers and against the master/main branch or manually triggered
    if: github.repository == 'nf-core/fetchngs' && github.event.review.state == 'approved' && (github.event.pull_request.base.ref == 'master' || github.event.pull_request.base.ref == 'main') || github.event_name == 'workflow_dispatch' || github.event_name == 'release'
    runs-on: ubuntu-latest
    steps:
      - name: Set revision variable
        id: revision
        run: |
          echo "revision=${{ (github.event_name == 'workflow_dispatch' || github.event_name == 'release') && github.sha || 'dev' }}" >> "$GITHUB_OUTPUT"

      - name: Launch workflow via Seqera Platform
        uses: seqeralabs/action-tower-launch@v2
        with:
          run_name: fetchngs_${{ matrix.profile }}
          workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }}
          access_token: ${{ secrets.TOWER_ACCESS_TOKEN }}
          compute_env: ${{ secrets[matrix.compute_env] }}
          revision: ${{ steps.revision.outputs.revision }}
          workdir: ${{ secrets[matrix.workdir] }}/work/fetchngs/work-${{ steps.revision.outputs.revision }}/${{ matrix.profile }}
          parameters: |
            {
              "hook_url": "${{ secrets.MEGATESTS_ALERTS_SLACK_HOOK_URL }}",
              "outdir": "${{ secrets[matrix.workdir] }}/fetchngs/results-${{ steps.revision.outputs.revision }}/${{ matrix.profile }}/"
            }
          profiles: ${{ matrix.profile }}

      - uses: actions/upload-artifact@v4
        with:
          name: Seqera Platform debug log file
          path: |
            seqera_platform_action_*.log
            seqera_platform_action_*.json