Merge pull request #469 from andreirie/json-schema-improvements

Json schema improvements

Author: andreirie

CHANGELOG.md

@@ -9,6 +9,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### `Fixed`
 
+- [#469](https://github.com/nf-core/funcscan/pull/469) Updated descriptions from 'nextflow_schema.json' and 'schema_input.json'.
+
 ### `Dependencies`
 
 ### `Deprecated`

assets/schema_input.json

@@ -10,7 +10,7 @@
             "sample": {
                 "type": "string",
                 "pattern": "^\\S+$",
-                "errorMessage": "Sample name must be provided and cannot contain spaces",
+                "errorMessage": "Sample ID must be provided, must be an integer or string and cannot contain spaces",
                 "meta": ["id"]
             },
             "fasta": {

nextflow_schema.json

@@ -41,8 +41,7 @@
                     "description": "MultiQC report title. Printed as page header, used for filename if not otherwise specified.",
                     "fa_icon": "fas fa-file-signature"
                 }
-            },
-            "help_text": ""
+            }
         },
         "screening_type_activation": {
             "title": "Screening type activation",
@@ -1408,7 +1407,7 @@
                     "description": "The p-value cutoff for protein domains to be included.",
                     "fa_icon": "fas fa-filter",
                     "default": 1e-9,
-                    "help_text": "The p-value cutoff for protein domains to be included.\n\nFor more information see the GECCO [documentation](https://github.com/zellerlab/GECCO).\n\n> Modifies tool parameter(s):\n> - GECCO: `--pfilter`"
+                    "help_text": "For more information see the GECCO [documentation](https://github.com/zellerlab/GECCO).\n\n> Modifies tool parameter(s):\n> - GECCO: `--pfilter`"
                 },
                 "bgc_gecco_threshold": {
                     "type": "number",